From 73881f11780f094ca10a071b0249fb6fb917e40b Mon Sep 17 00:00:00 2001 From: Aaron Petkau Date: Tue, 31 May 2022 11:35:55 -0500 Subject: [PATCH 1/2] Remove warning when aggegating --- staramr/results/AMRDetectionSummary.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/staramr/results/AMRDetectionSummary.py b/staramr/results/AMRDetectionSummary.py index 08686e9..37e3dd2 100644 --- a/staramr/results/AMRDetectionSummary.py +++ b/staramr/results/AMRDetectionSummary.py @@ -37,12 +37,12 @@ def __init__(self, files, resfinder_dataframe: DataFrame, quality_module_datafra def _compile_results(self, resistance_frame: DataFrame) -> DataFrame: df_summary = resistance_frame.sort_values(by=['Gene']).groupby(['Isolate ID']).aggregate( - lambda x: {'Gene': (self.SEPARATOR + ' ').join(x.get('Gene'))}) + {'Gene': lambda x: (self.SEPARATOR + ' ').join(x)}) return df_summary[['Gene']].copy() def _compile_plasmids(self, plasmid_frame: DataFrame) -> DataFrame: ds_summary = plasmid_frame.sort_values(by=['Gene']).groupby(['Isolate ID']).aggregate( - lambda x: {'Gene': (self.SEPARATOR + ' ').join(x.get('Gene'))}) + {'Gene': lambda x: (self.SEPARATOR + ' ').join(x)}) ds_frame = ds_summary[['Gene']].copy() From a66a975daa363e913862060277934dadb4122578 Mon Sep 17 00:00:00 2001 From: Aaron Petkau Date: Tue, 31 May 2022 11:37:20 -0500 Subject: [PATCH 2/2] Increment development version --- staramr/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/staramr/__init__.py b/staramr/__init__.py index 60de9ff..1944014 100644 --- a/staramr/__init__.py +++ b/staramr/__init__.py @@ -1 +1 @@ -__version__ = '0.8.0.dev2' +__version__ = '0.8.0.dev3'