diff --git a/CHANGELOG.md b/CHANGELOG.md index bab6fd35..1b1cba7f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,7 @@ +# Version 0.7.1 + +* Fix a bug so that the Sequence column in resfinder.tsv uses the isolate sequence instead of the reference sequence + # Version 0.7.0 * Added quality module that adds PASS/Fail column and detail information in Summary.tsv diff --git a/staramr/__init__.py b/staramr/__init__.py index a71c5c7f..f0788a87 100644 --- a/staramr/__init__.py +++ b/staramr/__init__.py @@ -1 +1 @@ -__version__ = '0.7.0' +__version__ = '0.7.1' diff --git a/staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py b/staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py index 758f407d..ee9e1b2a 100644 --- a/staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py +++ b/staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py @@ -54,5 +54,5 @@ def _get_result_rows(self, hit, database_name): hit.get_genome_contig_start(), hit.get_genome_contig_end(), hit.get_amr_gene_accession(), - hit.get_amr_gene_seq() + hit.get_genome_contig_hsp_seq() ]]