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    44 repositories

    • cohortMetaData

      Public
      data cohort meta data displayed on xena cohort page; search by cohort tags
      Python
      •
      Apache License 2.0
      •2•5•0•0•Updated Oct 2, 2024Oct 2, 2024

    • xena-GDC-ETL

      Public
      Extract, transform and load GDC data onto UCSC Xena
      xenagdc
      Python
      •
      Apache License 2.0
      •8•12•6•11•Updated Sep 26, 2024Sep 26, 2024

    • Xena-GDC-auto-test

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • ucsc-xena-client

      Public
      Functional genomics browser
      JavaScript
      •
      Apache License 2.0
      •42•57•102•21•Updated Aug 28, 2024Aug 28, 2024

    • gitbookdocs

      Public
      Documentation for our gitbook
      HTML
      •4•3•0•0•Updated Aug 6, 2024Aug 6, 2024

    • xenaConvert

      Public
      Python
      •0•0•0•0•Updated Jul 29, 2024Jul 29, 2024

    • ucsc-xena-wasm

      Public
      wasm methods for UCSC xena
      C
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 23, 2024Jul 23, 2024

    • Xena-GDC-Detect_Missing_Datasets

      Public
      This is testing script that checks for differences between data sets on the Xena hub and the GDC, providing the user with specific datasets that need updating.
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • wrangle

      Public
      data_wrangling
      Python
      •3•9•3•0•Updated Dec 15, 2023Dec 15, 2023

    • XenaGoWidget

      Public
      Xena Gene Set Viewer (demo: http://xenademo.berkeleybop.io/xena)
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •5•2•1•1•Updated Oct 8, 2023Oct 8, 2023

    • xena_blitzGSEA_appyter

      Public
      Python
      •0•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • xenaPython

      Public
      Python API for Xena Hub
      Python
      •
      Apache License 2.0
      •15•51•3•0•Updated May 2, 2023May 2, 2023

    • probeMaps

      Public
      0•0•0•0•Updated Apr 28, 2023Apr 28, 2023

    • xena-web

      Public
      landing page
      JavaScript
      •
      Apache License 2.0
      •4•0•1•1•Updated Jan 11, 2023Jan 11, 2023

    • viv

      Public
      Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
      JavaScript
      •
      MIT License
      •42•0•0•0•Updated Jun 16, 2022Jun 16, 2022

    • geotiff.js

      Public
      geotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.
      JavaScript
      •
      MIT License
      •182•0•0•0•Updated Jun 16, 2022Jun 16, 2022

    • ucsc-xena-server

      Public
      Turn-key functional genomics data server.
      JavaScript
      •
      Apache License 2.0
      •5•7•7•1•Updated May 13, 2022May 13, 2022

    • ucscxena.github.io

      Public
      Build a Jekyll blog in minutes, without touching the command line.
      SCSS
      •
      MIT License
      •35k•0•0•0•Updated Feb 15, 2022Feb 15, 2022

    • kaplan-meier

      Public
      Basic kaplan-meier methods in javascript
      JavaScript
      •
      Apache License 2.0
      •3•5•1•4•Updated Dec 27, 2021Dec 27, 2021

    • ux-resource-for-ucsc-genomics-institute

      Public
      1•1•0•0•Updated Dec 10, 2021Dec 10, 2021

    • Xena_DE_Analysis_Pipeline

      Public
      Python
      •2•2•0•0•Updated Aug 5, 2021Aug 5, 2021

    • xena-analysis-grails

      Public
      Groovy
      •0•0•4•0•Updated Apr 5, 2021Apr 5, 2021

    • xena-geneset-analysis-service

      Public archive
      node API service that runs and caches analysis results for genesets
      TypeScript
      •0•0•4•0•Updated Dec 5, 2020Dec 5, 2020

    • XenaAnalysisService

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•2•0•Updated Nov 25, 2020Nov 25, 2020

    • geneset-analysis-service

      Public archive
      TypeScript
      •1•0•0•0•Updated Nov 21, 2020Nov 21, 2020

    • tmpdownload

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 20, 2020Jul 20, 2020

    • xenaH5

      Public
      python scripts for converting 10x genomics single cell RNAseq data to Xena dense matrix file
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Mar 11, 2020Mar 11, 2020

    • fast-deep-equal

      Public
      The fastest deep equality check with Date and RegExp support
      JavaScript
      •
      MIT License
      •101•0•0•0•Updated Apr 6, 2019Apr 6, 2019

    • ehmutable

      Public
      js immutable helpers looking vaguely like clojure
      JavaScript
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 1, 2018Nov 1, 2018

    • client-template

      Public
      react template for client-side development
      JavaScript
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 18, 2018Sep 18, 2018