Repositories list

• biomedicus

  Public
  BioMedICUS: A biomedical and clinical NLP engine.

  natural-language-processingtext-analysisbiomedical-informatics+ 2nlphealth-informatics

  Java

  •

  Apache License 2.0

  •7•17•14•2•Updated Oct 7, 2024Oct 7, 2024

• mtap

  Public
  MTAP: A framework for distributed text analysis using gRPC and microservices-based architecture.

  pythonnlpnatural-language-processing+ 7microservicesframeworkgrpcpipelinestext-analysismtapjava

  Python

  •

  Apache License 2.0

  •2•6•15•3•Updated Oct 7, 2024Oct 7, 2024

• nlpie.github.io

  Public
  NLP-IE Group Organization Site

  HTML

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• model-cookbook

  Public template
  Python

  •0•0•0•0•Updated May 1, 2024May 1, 2024

• nlp-ensemble-explorer

  Public
  A framework for creating and evaluating NLP system ensembles

  Jupyter Notebook

  •

  Apache License 2.0

  •1•3•0•0•Updated Mar 31, 2024Mar 31, 2024

• lexical_gazetteer

  Public
  Python

  •

  Apache License 2.0

  •0•2•0•0•Updated Jun 8, 2023Jun 8, 2023

• biomedicus-tokenizer

  Public archive
  A lightweight (small and dependency-free) Java 8 library for Penn-like tokenization.

  lightweightopen-sourcejava-8+ 4penn-treebanktokenizationptbnlp

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 13, 2023Mar 13, 2023

• biomedicus-gpl

  Public archive
  GPL licensed extensions for the BioMedICUS project.

  Java

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Mar 13, 2023Mar 13, 2023

• biomedicus-rtf

  Public archive
  Implementation of Rich Text Format (RTF) parsing from the Biomedicus text analysis system.

  Java

  •

  Apache License 2.0

  •0•1•0•0•Updated Mar 13, 2023Mar 13, 2023

• biomedicus2

  Public archive
  Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.

  medicaluimaelectronic-health-record+ 4nlpnatural-language-processingtext-analysishealth-informatics

  Java

  •

  Apache License 2.0

  •11•44•23•0•Updated Mar 13, 2023Mar 13, 2023

• mtap-python-api

  Public
  Github pages Python API docs for nlpie/mtap.

  HTML

  •0•0•0•0•Updated Feb 23, 2023Feb 23, 2023

• icando-surgical-acp

  Public
  0•0•0•0•Updated Nov 30, 2022Nov 30, 2022

• nlp-adapt-kube

  Public
  Kubernetes cluster that supports NLP workflow to generate and interrogate artifacts from various annotator systems.

  XSLT

  •

  Apache License 2.0

  •3•0•0•0•Updated Jan 27, 2022Jan 27, 2022

• combo_searcher

  Public
  Apriori implementation to generate exhaustive set of boolean expressions.

  Python

  •0•0•0•0•Updated Oct 5, 2021Oct 5, 2021

• stomp.py-amq

  Public
  ActiveMQ messsaging via stomp.py with db reader/writer

  Python

  •0•0•0•0•Updated Jul 28, 2021Jul 28, 2021

• biomedicus-dlserver

  Public
  A simple python wsgi application using the Bottle framework to serve downloads while checking NLM UTS licenses for UMLS eligibility.

  Python

  •1•0•0•0•Updated Jan 22, 2021Jan 22, 2021

• Workshop_large_scale_nlp

  Public
  AIME 2020 Tutorial 2/AMIA 2019 W22: Large Scale Ensembled NLP Systems with Docker and Kubernetes

  Python

  •

  Apache License 2.0

  •7•7•0•0•Updated Aug 25, 2020Aug 25, 2020

• nlptab-webapp

  Public
  JavaScript

  •1•1•2•0•Updated Jul 30, 2020Jul 30, 2020

• pier-next

  Public
  NLP-PIER front-end, controllers, services, APIs

  JavaScript

  •0•0•0•0•Updated Dec 3, 2019Dec 3, 2019

• biomedicus-measures

  Public archive
  A lightweight (small and dependency-free) Java 8 library for identifying and normalizing numbers and measurements in text.

  numbersnlpmeasurements+ 1health-informatics

  Java

  •

  Apache License 2.0

  •0•3•0•0•Updated Oct 2, 2019Oct 2, 2019

• clinical-sentences

  Public archive
  Python

  •

  Apache License 2.0

  •0•5•0•0•Updated Aug 27, 2019Aug 27, 2019

• nlp-adapt

  Public
  Virtual machine that supports NLP workflow to generate and interrogate artifacts from various annotator systems.

  Shell

  •2•6•7•0•Updated Apr 9, 2019Apr 9, 2019

• python-tokenizer

  Public
  Python

  •0•0•0•0•Updated Mar 19, 2019Mar 19, 2019

• restful-tokenizer-api-python-flask

  Public
  Simple Flask REST API in docker container providing tokenization service

  Python

  •12•0•0•0•Updated Mar 13, 2019Mar 13, 2019

• dkpro-cassis

  Public
  UIMA CAS processing library written in Python

  Python

  •

  Apache License 2.0

  •22•0•0•0•Updated Feb 18, 2019Feb 18, 2019

• jupyter

  Public
  Collection of various notebooks

  Jupyter Notebook

  •0•0•0•0•Updated Dec 1, 2018Dec 1, 2018

• word2vec-api

  Public
  Simple web service providing a word embedding model

  Python

  •355•0•0•0•Updated Jul 17, 2018Jul 17, 2018

• amicus

  Public
  The Amicus Metasystem for Interoperation and Combination of UIMA Systems

  Java

  •

  Apache License 2.0

  •1•1•0•0•Updated Jul 3, 2018Jul 3, 2018

• nlptab

  Public archive
  A system for integration and visualization of diverse biomedical NLP applications.

  nlpelasticsearchnlp-systems

  Java

  •

  Apache License 2.0

  •1•3•1•0•Updated Feb 21, 2018Feb 21, 2018

• modeldeid

  Public
  De-identification for co-occurrence models

  HTML

  •

  Other

  •0•0•0•0•Updated Nov 10, 2017Nov 10, 2017