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    107 repositories

    • VFB_reporting_results

      Public
      Repository containing the results of various data change and consistency checking.
      Python
      •0•1•2•0•Updated Oct 6, 2024Oct 6, 2024

    • vfb-pipeline-collectdata

      Public
      Shell
      •
      Apache License 2.0
      •0•0•8•1•Updated Oct 5, 2024Oct 5, 2024

    • vfb-pipeline-polishing

      Public
      Final cypher steps after complete pipeline load
      Python
      •
      MIT License
      •0•0•1•0•Updated Oct 4, 2024Oct 4, 2024

    • neo4j2owl

      Public
      Semantics preserving mapping of OWL 2 EL and Neo4J. Under development, do not use.
      vfbvirtualflybrain
      Java
      •
      Apache License 2.0
      •4•6•17•26•Updated Oct 4, 2024Oct 4, 2024

    • vfb_expression_annotator

      Public
      VFB Expression Annotator tags classes based on the VFB clas expression config
      Java
      •0•0•0•23•Updated Oct 4, 2024Oct 4, 2024

    • geppetto-vfb

      Public
      VFB (v2) application
      JavaScript
      •
      Other
      •1•3•66•2•Updated Oct 4, 2024Oct 4, 2024

    • owltools

      Public
      OWLTools
      Web Ontology Language
      •
      BSD 3-Clause "New" or "Revised" License
      •33•0•0•34•Updated Oct 4, 2024Oct 4, 2024

    • VFB_connect

      Public
      A library for querying VFB servers (neo4j, owlery, solr)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•4•30•34•Updated Oct 3, 2024Oct 3, 2024

    • VFB_json_schema

      Public
      VFB json schema spec + code for rolling queries producing VFB json schema + related integration tests
      Python
      •
      Apache License 2.0
      •0•0•31•1•Updated Oct 3, 2024Oct 3, 2024

    • VFB2

      Public
      Virtual Fly Brain Documentation Site
      HTML
      •
      MIT License
      •8•3•162•0•Updated Oct 1, 2024Oct 1, 2024

    • curation

      Public
      A repository of records specifying curation into the VFB Knowledge Base
      Python
      •0•0•22•6•Updated Oct 1, 2024Oct 1, 2024

    • vfb-driver-ontology

      Public
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • vfb-prod

      Public
      Shell
      •
      Apache License 2.0
      •0•0•2•1•Updated Sep 27, 2024Sep 27, 2024

    • VFB_reporting

      Public
      Scripts for reporting on the state of VFB content and pipeline
      Jupyter Notebook
      •0•0•11•5•Updated Sep 26, 2024Sep 26, 2024

    • VFB_neo4j

      Public
      A python package for writing schema-compliant content to VFB neo4J DBs
      neo4jowlflybase
      Python
      •
      Apache License 2.0
      •1•0•66•15•Updated Sep 24, 2024Sep 24, 2024

    • Docker-VFB-Neo4j

      Public
      Basic Neo4J instance setup for VFB
      Dockerfile
      •0•0•0•0•Updated Sep 23, 2024Sep 23, 2024

    • vfb-scRNAseq-gene-annotations

      Public
      Makefile
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • vfb-scRNAseq-ontology

      Public
      An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.
      Makefile
      •0•0•1•0•Updated Sep 19, 2024Sep 19, 2024

    • vfb-neurotransmitter-predictions

      Public
      Neurotransmitter predictions and confidence values for VFB individuals. Data taken from neuprint.
      Makefile
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • vfb-extension-ontology

      Public
      A small application ontology used by VFB.
      Makefile
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • SOLR_sideloader

      Public
      Pass data directly from PDB to SOLR server
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • vfb-pipeline-update-prod

      Public
      Shell
      •
      Apache License 2.0
      •0•0•1•2•Updated Sep 16, 2024Sep 16, 2024

    • org.geppetto.frontend

      Public
      Geppetto frontend bundle (Web Application)
      JavaScript
      •
      Other
      •25•0•0•30•Updated Sep 14, 2024Sep 14, 2024

    • vfb_rest

      Public
      HTML
      •0•0•1•35•Updated Sep 5, 2024Sep 5, 2024

    • jupyterhub

      Public
      wrapper with github Oauth
      Apache License 2.0
      •0•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • VFB_connectomics_import

      Public
      A project to produce RDF/OWL representations of connectomics data for import to the VFB integration layer triple store.
      Python
      •0•0•4•8•Updated Sep 1, 2024Sep 1, 2024

    • VFB_connect_api

      Public
      API wrapping VFB_connect library
      Python
      •0•0•1•10•Updated Aug 30, 2024Aug 30, 2024

    • training

      Public
      Repository for training notebooks
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •2•4•0•26•Updated Aug 30, 2024Aug 30, 2024

    • vfb-pipeline-dumps

      Public
      Pipeline that creates dumps from the triplestore for consumption by the downstream services
      Python
      •
      Apache License 2.0
      •0•0•13•2•Updated Aug 30, 2024Aug 30, 2024

    • NBLAST_matrix_proc

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•3•Updated Aug 28, 2024Aug 28, 2024