From f07a8e245365186998a6add142ffa89d7212c4e4 Mon Sep 17 00:00:00 2001
From: kodysy02 <kodysy02@mssm.edu>
Date: Wed, 3 Jul 2024 11:56:27 -0400
Subject: [PATCH] Defaulting convert_ucsc_contig_names to True for consistency
 with past behavior

---
 varcode/vcf.py     | 8 ++++----
 varcode/version.py | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/varcode/vcf.py b/varcode/vcf.py
index f4ca45d..1c25ba8 100644
--- a/varcode/vcf.py
+++ b/varcode/vcf.py
@@ -46,7 +46,7 @@ def load_vcf(
         sort_key=variant_ascending_position_sort_key,
         distinct=True,
         normalize_contig_names=True,
-        convert_ucsc_contig_names=None):
+        convert_ucsc_contig_names=True):
     """
     Load reference name and Variant objects from the given VCF filename.
 
@@ -98,10 +98,10 @@ def load_vcf(
         to uppercase (e.g. "chrx" -> "chrX"). If you don't want
         this behavior then pass normalize_contig_names=False.
 
-    convert_ucsc_contig_names : bool
+    convert_ucsc_contig_names : bool, default True
         Convert chromosome names from hg19 (e.g. "chr1") to equivalent names
-        for GRCh37 (e.g. "1"). By default this is set to True if the genome
-        of the VCF is a UCSC reference and otherwise set to False.
+        for GRCh37 (e.g. "1"). By default this is set to True. If None, it
+        also evaluates to True if the genome of the VCF is a UCSC reference.
     """
 
     require_string(path, "Path or URL to VCF")
diff --git a/varcode/version.py b/varcode/version.py
index c68196d..a955fda 100644
--- a/varcode/version.py
+++ b/varcode/version.py
@@ -1 +1 @@
-__version__ = "1.2.0"
+__version__ = "1.2.1"