From 54be3cec46774137dde1369011ab3368922405dc Mon Sep 17 00:00:00 2001 From: github-actions Date: Fri, 14 Jun 2024 12:55:41 +0000 Subject: [PATCH] 1.4.0 Automatically generated by python-semantic-release --- CHANGELOG.md | 82 ++++++++++++++++++++++++++++++++++++++++++++++++++ pyproject.toml | 2 +- 2 files changed, 83 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c2d6092c8..56af50ced 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,88 @@ +## v1.4.0 (2024-06-14) +### ✨ Feature + + +- \[**config**\] 24.06 data release fixes (#639) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + + +- credible set quality filtering (#640) [\@Daniel-Considine](mailto:113430683+Daniel-Considine@users.noreply.github.com) + + +- enable interface with gcp secrets manager (#635) [\@Irene López](mailto:45119610+ireneisdoomed@users.noreply.github.com) + + +- adding locus-breaker clumping method (#634) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com) + + +- \[**spark-helpers**\] enforce schema of returned objects (#617) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com) + + +- \[**qtl**\] ingest credible sets from single cell derived QTLs (#630) [\@Irene López](mailto:45119610+ireneisdoomed@users.noreply.github.com) + + +- \[**data_release**\] preparation for 24.06 data release (#633) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + + +- \[**config**\] extract gwas_significance parameter to step configuration (#628) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + + +- \[**config**\] gnomAD steps configuration extraction and versioning (#620) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + + +- fine-mapping simulations class (#618) [\@Yakov](mailto:yt4@sanger.ac.uk) + +### 🐛 Fix + + +- \[**L2GPrediction**\] schema validation (#642) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + + +- \[**docs**\] fixed typo in l2g_prediciton schema page (#629) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + + +- \[**SummaryStatistics**\] fix in sanity_filter (#623) [\@Yakov](mailto:yt4@sanger.ac.uk) + + +- \[**susie_finemapper**\] fix in the fine-mapper in case of sum stat imputation is False (#627) [\@Yakov](mailto:yt4@sanger.ac.uk) + + +- \[**susie_finemapper**\] correct syntax for saving the logs df (#625) [\@Kirill Tsukanov](mailto:tskir@users.noreply.github.com) + + +- \[**ld**\] correct syntax for the static method (#624) [\@Kirill Tsukanov](mailto:tskir@users.noreply.github.com) + + +- \[**docs**\] update roadmap.md (#622) [\@buniello](mailto:30833755+buniello@users.noreply.github.com) + + +- \[**spark helpers**\] sorter function updated to avoid crash (#613) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com) + +### 🏗 Build + + +- \[**deps-dev**\] bump dbldatagen from 0.3.5 to 0.4.0 (#637) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps**\] bump scikit-learn from 1.4.0 to 1.5.0 (#638) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps-dev**\] bump ipython from 8.24.0 to 8.25.0 (#636) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps**\] bump wandb from 0.16.2 to 0.17.0 (#606) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps-dev**\] bump pep8-naming from 0.13.3 to 0.14.1 (#616) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps**\] bump typing-extensions from 4.11.0 to 4.12.1 (#632) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps**\] use pandas[gcp, parquet] (#626) [\@Kirill Tsukanov](mailto:tskir@users.noreply.github.com) + ## v1.3.0 (2024-05-17) ### ✨ Feature diff --git a/pyproject.toml b/pyproject.toml index 062085290..177081f94 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,7 +1,7 @@ [tool.poetry] name = "gentropy" # !! version is managed by semantic_release -version = "1.3.0" +version = "1.4.0" description = "Open Targets python framework for post-GWAS analysis" authors = ["Open Targets core team"] license = "Apache-2.0"