Releases: opencb/opencga
Releases · opencb/opencga
v2.2.4
Contributors
pfurio, j-coll, and juanfeSanahuja
Assets 2
v2.2.3
v2.4.0
What's Changed
- TASK-814 - Upgrade JWT library dependency by @pfurio in #1989
- TASK-814 - Upgrade JWT library dependency by @pfurio in #1990
- TASK-803 - Add due-date filter to Clinical Analysis Browser and Case Portal by @pfurio in #1992
- TASK-473 - Missing filter for source in disease panel browser by @pfurio in #1993
- TASK-804 - LDAP connection hangs - for develop by @j-coll in #1986
- TASK-803 - Add due-date filter to Clinical Analysis Browser and Case Portal by @pfurio in #1995
- TASK-1036 - OpenCGA Storage Hadoop EMR6.1 doesn't compile with mvn 3.8.5 by @j-coll in #2001
- TASK-926 - Add pyopencga and R package generation to CI/CD pipeline by @juanfeSanahuja in #1999
- TASK-607 - Automatically close cases by @pfurio in #2000
- TASK-944 - Create a new Meta web service by @juanfeSanahuja in #1997
- TASK-868 - Test Data Generator improvements by @juanfeSanahuja in #2003
- TASK-452 - opencga CLI: service meta only has the endpoint API by @juanfeSanahuja in #2007
- TASK-551 - Migrate Hadoop tests to version HDP 3.1 by @j-coll in #2006
- TASK-831 - Update "Pathogenic/Reported Variant Database" (aka CVA) index by @jtarraga in #2002
- TASK-1208 - "IllegalArgumentException: Unsupported object type: java.lang.String" at VariantBrowser by @j-coll in #2018
- TASK-1221 - Corpasome template version is not synchronized with OpenCGA version by @j-coll in #2019
- TASK-830 - Add Exomiser as an automatic interpreter by @imedina in #2020
Full Changelog: v2.3.1...v2.4.0
Contributors
jtarraga, imedina, and 3 other contributors
Assets 4
v2.3.1
What's Changed
- TASK-804 - LDAP connection hangs by @pfurio in #1978
- TASK-869 - OpenCGA in K8S fails to startup by @j-coll in #1982
- TASK-889 - OpenCGA returns a NullPointerException when trying to update a variant by @pfurio in #1984
- TASK-885 - Fix AutoIncrementVersion migration by @pfurio in #1981
- TASK-804 for release-2.3.x by @j-coll in #1985
- TASK-935 - pyopencga limit and name fix by @dapregi in #1991
- TASK-889 - OpenCGA returns a NullPointerException when trying to update a variant by @pfurio in #1987
- TASK-885 - Fix AutoIncrementVersion migration by @pfurio in #1988
- TASK-947 - Transcript flags are missed in Variants from projects using CB4.x by @j-coll in #1994
- TASK-960 - Annotation with CB4 using CB5 client ignores the transcript flags by @j-coll in #1996
- TASK-1052 - opencga install/setup fails on new database environment by @pfurio in #2004
- TASK-966 - SVB: Query by large panel+lof+missense timeouts after 3 minutes by @j-coll in #1998
- TASK-789 - 1KGenomes Allele Frequenciess are discordant between Variant Browser ("1000G") and Case Portal's Sample Variant Browser ("1kG_phase3") by @j-coll in #2005
- TASK-1084 - Port Patch Version 1.0.2 by @imedina in #2011
- TASK-1100 - Project configured cellbase being ignored in VariantStorageManager by @pfurio in #2012
- TASK-1147 - Family roles not set properly by @pfurio in #2015
- TASK-1070 - Implement variant prune operation by @j-coll in #2016
- TASK-1185 - IndexOutOfBoundsException when indexing second variant file from a sample by @j-coll in #2017
Full Changelog: v2.3.0...v2.3.1
Contributors
imedina, pfurio, and 2 other contributors
Assets 2
v2.2.2
What's Changed
- fixed url for pyopencga by @pamag in #1821
- client: improve catalog notebook #1716 by @lauralopezreal in #1808
- Fix token auto-refreshing by @dapregi in #1830
- Python Notebook Improvements by @lauralopezreal in #1836
- Fix wait_for_job status functionality by @dapregi in #1911
- TASK-512 by @j-coll in #1914
- TASK-512 by @j-coll in #1915
- TASK-516 by @j-coll in #1916
- TASK-515 by @j-coll in #1917
- TASK-529 by @j-coll in #1918
- TASK-532 by @j-coll in #1919
- #TASK-531 by @pfurio in #1921
- TASK-530 by @pfurio in #1920
- TASK-530 by @pfurio in #1922
- TASK-537 by @pfurio in #1923
- TASK-453 by @j-coll in #1924
- TASK-536 by @j-coll in #1925
- TASK-557 by @j-coll in #1926
- TASK-561 by @j-coll in #1927
- TASK-529 by @j-coll in #1928
- TASK-565 by @pfurio in #1929
- TASK-569 by @jtarraga in #1931
- TASK-602 by @pfurio in #1934
- TASK-564 by @pfurio in #1933
- TASK-613 by @j-coll in #1936
- TASK-618 by @j-coll in #1937
- TASK-620 by @j-coll in #1938
- TASK-625 by @pfurio in #1939
- TASK-632 by @j-coll in #1940
- TASK-566 by @j-coll in #1945
- TASK-632 by @j-coll in #1946
- TASK-621 by @j-coll in #1947
- TASK-649 by @j-coll in #1949
- TASK-671 by @j-coll in #1956
- TASK-686 by @j-coll in #1957
- TASK-691 by @pfurio in #1958
- TASK-702 by @pfurio in #1960
- TASK-618 by @j-coll in #1963
- TASK-708 by @j-coll in #1964
- TASK-709 by @pfurio in #1965
- TASK-710 by @pfurio in #1966
- TASK-804 by @pfurio in #1978
- TASK-947 by @j-coll in #1994
- TASK-960 by @j-coll in #1996
Full Changelog: v2.1.2...v2.2.2
Contributors
pamag, jtarraga, and 3 other contributors
Assets 2
v2.3.0
What's Changed
- Fix wait_for_job functionality by @dapregi in #1905
- TASK-508 - Update OpenCGA dependencies by @imedina in #1912
- TASK-552 - Add new field 'locked' to the interpretation data model by @pfurio in #1932
- TASK-425 - Allow cases to lock panels if interpretation contain at least one case panel by @pfurio in #1935
- TASK-668 - Upgrade Jersey lib to fix Java 11 compatibility issue by @imedina in #1952
- TASK-669 - Make OpenCGA Docker Compose version configurable by @imedina in #1953
- TASK-359 - Rename deleted collections by @pfurio in #1962
- TASK-550 - Create a default SampleIndexConfiguration when study is created by @pfurio in #1961
- TASK-354 - Configure CellBase host when creating a new project by @juanfeSanahuja in #1955
- TASK-630 - Fully private HDInsight deployments by @j-coll in #1968
- TASK-734 - Missing internal field in DiseasePanel data model by @pfurio in #1969
- TASK-665 - OpenCGA cli shell: list studdies need to have "\n" or ", " between studies by @juanfeSanahuja in #1954
- TASK-504 - Code maintaince by @j-coll in #1971
- TASK-323 - Autoincrement version by @pfurio in #1970
- TASK-428 - Rename OpenCGA Variant Storage Secondary Index names by @juanfeSanahuja in #1967
- TASK-807 - JWT secret key issue by @pfurio in #1972
- TASK-815 - Logger Appender TXT file not being used on log4j2.xml by @j-coll in #1975
- TASK-697 - Panel import timeout by @pfurio in #1973
- TASK-707 - Fix JUnit tests by @pfurio in #1974
- TASK-781 - Allow clinical users to define a default filter in the study configuration by @pfurio in #1977
- TASK-451 - Random "hconnection-0xHHHHHH closed" using Apache Phoenix by @j-coll in #1976
- TASK-521 - OpenCGA Command Line improvements by @j-coll in #1948
Full Changelog: v2.2.1...v2.3.0
Contributors
imedina, pfurio, and 3 other contributors
Assets 3
v2.2.1
What's Changed
- Fix wait_for_job status functionality by @dapregi in #1911
- TASK-512 by @j-coll in #1914
- TASK-512 by @j-coll in #1915
- TASK-516 by @j-coll in #1916
- TASK-515 by @j-coll in #1917
- TASK-529 by @j-coll in #1918
- TASK-532 by @j-coll in #1919
- #TASK-531 by @pfurio in #1921
- TASK-530 by @pfurio in #1920
- TASK-530 by @pfurio in #1922
- TASK-537 by @pfurio in #1923
- TASK-453 by @j-coll in #1924
- TASK-536 by @j-coll in #1925
- TASK-557 by @j-coll in #1926
- TASK-561 by @j-coll in #1927
- TASK-529 by @j-coll in #1928
- TASK-565 by @pfurio in #1929
- TASK-569 by @jtarraga in #1931
- TASK-602 by @pfurio in #1934
- TASK-564 by @pfurio in #1933
- TASK-613 by @j-coll in #1936
- TASK-618 by @j-coll in #1937
- TASK-620 by @j-coll in #1938
- TASK-625 by @pfurio in #1939
- TASK-632 by @j-coll in #1940
- TASK-566 by @j-coll in #1945
- TASK-632 by @j-coll in #1946
- TASK-621 by @j-coll in #1947
- TASK-649 by @j-coll in #1949
- TASK-671 by @j-coll in #1956
- TASK-686 by @j-coll in #1957
- TASK-691 by @pfurio in #1958
- TASK-702 by @pfurio in #1960
- TASK-618 by @j-coll in #1963
- TASK-708 by @j-coll in #1964
- TASK-709 by @pfurio in #1965
- TASK-710 by @pfurio in #1966
New Contributors
Full Changelog: v2.2.0...v2.2.1
Contributors
jtarraga, pfurio, and 2 other contributors
Assets 3
v1.4.3
v2.2.0
Full Changelog: v2.1.1...v2.2.0
What's Changed
- fixed url for pyopencga by @pamag in #1821
- client: improve catalog notebook #1716 by @lauralopezreal in #1808
- Fix token auto-refreshing by @dapregi in #1830
- Python Notebook Improvements by @lauralopezreal in #1836
Full Changelog: v2.1.1...v2.2.0
Contributors
pamag and dapregi
Assets 3
v2.2.0-rc2
New RC release 2.2.0-rc2