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Merge branch 'release-2.8.2.x' into TASK-4642 #1073

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Merge branch 'release-2.8.2.x' into TASK-4642

Merge branch 'release-2.8.2.x' into TASK-4642 #1073

Triggered via push June 28, 2023 13:50
@j-collj-coll
pushed 80a8d24
TASK-4642
Status Success
Total duration 42m 32s
Artifacts 2
This run and associated checks have been archived and are scheduled for deletion. Learn more about checks retention

task.yml

on: push
build  /  Build Java app
15m 8s
build / Build Java app
test  /  Execute Sonar Analysis
8m 42s
test / Execute Sonar Analysis
test  /  Execute JUnit and Jacoco tests
15m 55s
test / Execute JUnit and Jacoco tests
Matrix: test / Publish test results
Check SNAPSHOT version
0s
Check SNAPSHOT version
Check TASK version
0s
Check TASK version
Deploy in maven only for renamed versions  /  Deploy to Maven and GitHub Packages
Deploy in maven only for renamed versions / Deploy to Maven and GitHub Packages
deploy-docker  /  Push Docker image
3m 38s
deploy-docker / Push Docker image
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Annotations

4 errors and 1 warning
HadoopVariantStorageEngineSplitDataTest.testDuplicatedVariantsAccepted1: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineSplitDataTest.java#L259
expected:<chr22[_1-2].variant-test-file.v...> but was:<chr22[].variant-test-file.v...>
HadoopVariantStorageEngineSplitDataTest.testDuplicatedVariantsAccepted2: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineSplitDataTest.java#L270
expected:<chr22[].variant-test-file.v...> but was:<chr22[_1-2-DUP].variant-test-file.v...>
HadoopVariantStorageEngineSplitDataTest.testLoadByRegion: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineSplitDataTest.java#L415
expected:<...: [{"fileId": "chr22[].variant-test-file.v...> but was:<...: [{"fileId": "chr22[_1-2].variant-test-file.v...>
HadoopVariantStatisticsManagerTest.testJulieTool: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L143
Missing annotator information for VariantAnnotator: class org.opencb.opencga.storage.core.variant.annotation.DummyTestAnnotator
build / Build Java app
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Artifacts

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Name Size
build-folder Expired
800 MB
workdir Expired
60.9 MB