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add an optional filter to VCF variant annotation #630

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add an optional filter to VCF variant annotation #630

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julie-sullivan
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Added a parameter to variant-annotation to filter on the FILTER column in VCF files:

      --filter                     STRING        string indicating the FILTER label that variants must have to be annotated. Only variants with this label will be written in the output.
  • Added an optional FILTER option
  • Added a passing unit test (all tests are passing for this test class)

Please see the PR to merge in v4 #554

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@imedina imedina Awaiting requested review from imedina

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