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HPG Aligner is high-performance and highly sensitive NGS aligner. Both DNA and RNA-seq modes are implemented

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Welcome to OpenCB HPG Aligner NGS

'bioinfo-libs' is a C library with bioinformatic data format parsers and BWT and SW aligners. It's part of HPG project.


COMPONENTS
This library consist of:
 * several data format parsers: gff, bam, vcf, bed, ...
 * HPC implementation of two widely used sequence aligners: Burrows-Whheler Transform (BWT) and Smith-Waterman (SW)


CONTACT
You can contact any of the following developers:
 * Joaquin Tarraga ([email protected])
 * Hector Martinez
 * Ignacio Medina ([email protected])


BUILDING
Scons is used as building system, to build the library download 'next' branch (for the most recent library) and execute:

 $ scons

GCC4.4+ is the only requirement.


DOCUMENTATION
You can find more info about HPG project and bioinfo-libs at:

 http://wiki.opencb.org/projects/hpg/doku.php

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HPG Aligner is high-performance and highly sensitive NGS aligner. Both DNA and RNA-seq modes are implemented

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