From 77b8e63f92ba1376b5771d9c6c2560dd3ab5852b Mon Sep 17 00:00:00 2001 From: Hongxin Date: Fri, 8 Dec 2023 08:04:44 -0600 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index b84abc1..3d2ceb9 100644 --- a/README.md +++ b/README.md @@ -30,7 +30,7 @@ Example input files are under [data](data). An example script is here: [example. Annotates variants in MAF(https://docs.gdc.cancer.gov/Data/File_Formats/MAF_Format/) with OncoKB™ annotation. Supports both python2 and python3. Get more details on the command line using `python MafAnnotator.py -h`. -We recommend processing VCF files by [vcf2maf](https://github.com/mskcc/vcf2maf/) with [OncoKB™ isoforms](https://www.oncokb.org/api/v1/utils/allCuratedGenes) before using the `MafAnnotator` here. +We recommend processing VCF files by [vcf2maf](https://github.com/mskcc/vcf2maf/) before using the `MafAnnotator` here. #### Atypical Alteration You can still use MAF format to annotate atypical alterations, such as MSI-H, TMB-H, EGFR vIII. Please see more examples [HERE](data/example_atypical_alterations.txt).