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turn off reasoner in makefile #8

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shawntanzk opened this issue Mar 2, 2022 · 2 comments
Open

turn off reasoner in makefile #8

shawntanzk opened this issue Mar 2, 2022 · 2 comments

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@shawntanzk
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turn off reasoner here

# merge uberon + sources, reason & relax (EC -> SC)

and make all and see if it is a good starting point

@shawntanzk
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Current error on:

robot merge --input sources/allen-dhba.obo --input sources/allen-dmba.obo --input sources/allen-hba.obo --input sources/allen-mba.obo --input sources/allen-pba.obo --input sources/uberon-bridge-to-aba.obo --input sources/uberon-bridge-to-dhba.obo --input sources/uberon-bridge-to-dmba.obo --input sources/uberon-bridge-to-hba.obo --input sources/uberon-bridge-to-mba.obo --input sources/uberon-bridge-to-pba.obo annotate --ontology-iri $(URIBASE)/$@ -o $@

no target for sources files and no sources files loaded in - should probably have a make target to download it from uberon but add it to .gitignore

@shawntanzk
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see #10 for fixes to get full run with reasoner off
see #11 for reports

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