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Failing to Identify "reintubated" #97

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DaveJohnson8080 opened this issue Jul 26, 2021 · 0 comments
Open

Failing to Identify "reintubated" #97

DaveJohnson8080 opened this issue Jul 26, 2021 · 0 comments
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@benknoll-umn
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bug Something isn't working java

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@DaveJohnson8080
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Describe the bug
Biomedicus is unable to identify "reintubated" that matches CUI C4698387

To Reproduce
Test with licensed umls 3.0b9 data. Use a short doc with the following text.

The patient was reintubated. The patient was extubated on hospital day number thirteen, but failed extubation

Expected behavior
Identify CUI C4698387

Terminal Output
NA

Environment

  • OS:[e.g. Ubuntu 18.04
  • Version: 3.0b10
  • Python Version 3.6.9
  • Java Version OpenJDK 11

Additional context

The UMLS base files seem to have the correct information for C4698387 and we're including TUI T033.

MRCONSO:
C4698387|ENG|P|L1383818|PF|S18009923|Y|A29376729||LA17996-2||LNC|LA|LA17996-2|Reintubated|0|N|256|

MRSTY:
C4698387|T033|||||

MRXNS_ENG:
ENG|reintubate|C4698387|L1383818|S18009923|

even adding another MRXNS_ENG entry with "reintubated" doesn't seem to help.
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