Skip to content

Releases: nipreps/niworkflows

1.2.0

22 May 07:19
Compare
Choose a tag to compare

Release notes

First release in the 1.2.x series. This release includes a variety of enhancements
and bug fixes, including a large scale refactoring of DerivativesDataSink.

CHANGES

  • FIX: Purge greedy lstrip from reports (#521)
  • FIX: Add DWI default patterns for dMRIPrep's reportlets (#504)
  • FIX: Merge/SplitSeries write to path of input image, instead of cwd (#503)
  • FIX: Better generalization and renaming+relocation in the API of extract_wm (#500)
  • FIX: Increase fault tolerance of DerivativesDataSink (#497)
  • FIX: Match N4-only workflow outputs to brain extraction workflow (#496)
  • FIX: Set default volumetric resolution within OutputReferencesAction to native (#494)
  • ENH: Upstream NiTransforms module from fMRIPrep (#525)
  • ENH: Improve DerivativesDataSink flexibility (#507) (#514) (#516)
  • ENH: Add utility function to quickly check for FS license (#505)
  • ENH: Add NiBabel-based split and merge interfaces (#489)
  • ENH: Show registration reportlets inline within Jupyter notebooks (#493)
  • ENH: Ensure subcortical volume in CIFTI is in LAS orientation (#484)
  • ENH: Produce carpetplot from CIFTI file (#491)
  • ENH: Option to set DerivativesDataSink datatype (#492) (#495)
  • MAINT: Revert #496 -- N4-only workflow connections (#498)
  • MAINT: Transfer brainmask script from fMRIPrep (#488)

1.2.0rc5

23 Apr 00:22
Compare
Choose a tag to compare
1.2.0rc5 Pre-release
Pre-release
Release Notes
-------------
<1.2.0 release notes TBD>

CHANGES
-------

  * FIX: Add DWI default patterns for dMRIPrep's reportlets (#504)
  * FIX: Merge/SplitSeries write to path of input image, instead of cwd (#503)
  * FIX: Better generalization and renaming+relocation in the API of ``extract_wm`` (#500)
  * FIX: Increase fault tolerance of DerivativesDataSink (#497)
  * FIX: Match N4-only workflow outputs to brain extraction workflow (#496)
  * FIX: Set default volumetric resolution within OutputReferencesAction to native (#494)
  * ENH: Add nibabel-based split and merge interfaces (#489)
  * ENH: Show registration reportlets inline within Jupyter notebooks (#493)
  * ENH: Ensure subcortical volume in CIFTI is in LAS orientation (#484)
  * ENH: Produce carpetplot from CIFTI file (#491)
  * ENH: Option to set DerivativesDataSink datatype (#492) (#495)
  * MAINT: Revert #496 -- N4-only workflow connections (#498)
  * MAINT: Transfer brainmask script from fMRIPrep (#488)

1.2.0rc4

16 Apr 22:26
Compare
Choose a tag to compare
1.2.0rc4 Pre-release
Pre-release
1.2.0 (TBD)

Fourth release candidate before starting the 1.2.x series.

  * FIX: Better generalization and renaming+relocation in the API of ``extract_wm`` (#500)
  * FIX: Increase fault tolerance of DerivativesDataSink (#497)
  * FIX: Match N4-only workflow outputs to brain extraction workflow (#496)
  * FIX: Set default volumetric resolution within OutputReferencesAction to native (#494)
  * ENH: Add nibabel-based split and merge interfaces (#489)
  * ENH: Show registration reportlets inline within Jupyter notebooks (#493)
  * ENH: Ensure subcortical volume in CIFTI is in LAS orientation (#484)
  * ENH: Produce carpetplot from CIFTI file (#491)
  * ENH: Option to set DerivativesDataSink datatype (#492) (#495)
  * MAINT: Revert #496 -- N4-only workflow connections (#498)
  * MAINT: Transfer brainmask script from fMRIPrep (#488)

1.1.12

19 Mar 18:24
Compare
Choose a tag to compare

Release Notes

Bug-fix release in the 1.1.x series.

CHANGES

  • FIX: Update naming patterns in figures.json (#483)
  • FIX: Add CE agent to output figure filename templates (#482)

1.1.11

19 Mar 18:24
Compare
Choose a tag to compare

Release Notes

Bug-fix release to improve CIFTI compatibility with workbench tools.

CHANGES

  • FIX: Ensure BOLD and label orientations are equal (#477)

1.1.10

11 Mar 21:18
Compare
Choose a tag to compare

Release Notes

Bug-fix release in the 1.1.x series.

CHANGES

  • ENH: Overwrite attr's string conversion dunders (#475)

1.1.9

05 Mar 16:45
Compare
Choose a tag to compare

Release Notes

Bug-fix release in the 1.1.x series.

This release contains maintenance actions on the CI infrastructure after
migration to the NiPreps organization.

CHANGES

  • FIX: replace mutable list with tuple in ANTs' workflow (#473)
  • MAINT: Pacify security patterns found by Codacy (#474)
  • MAINT: Miscellaneous housekeeping (#472)
  • MAINT: Fix test_masks (#470)
  • MAINT: Use docker-registry for caching on CircleCI (#471)
  • MAINT: Revise code coverage collection (#469)
  • MAINT: Transfer to nipreps organization (#468)

1.1.8

05 Mar 16:00
Compare
Choose a tag to compare

Release Notes

Bug-fix release in the 1.1.x series.

This release includes some minor improvements to the formatting of reports and derivative metadata.

CHANGES

  • FIX: Check fo valid qform before calculating change (#466) @effigies
  • ENH: Display errors as summary/details elements (#464) @effigies
  • ENH: Add a pure-Python ApplyMask interface, based on NiBabel (#463) @oesteban
  • MAINT: Replace os operations with pathlib, indent JSON sidecars (#467) @mgxd

1.1.7

14 Feb 14:11
Compare
Choose a tag to compare

Release Notes

Minor improvements to enable fMRIPrep 20.0.0 release.

CHANGES

  • ENH: Revise SpatialReference caching for ease of use, accessibility (#461) @mgxd
  • ENH: Downgrade log level for superfluous scans (#460) @mgxd
  • ENH: Enable optional BIDS entity filtering to data collection utility (#407) @bpinsard

1.1.6

07 Feb 17:59
Compare
Choose a tag to compare

Release Notes

Update NiBabel pinned version.

CHANGES

  • MAINT: Update nibabel's pin to >=3.0.1