diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 177fd90f..d4ad3843 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -12,7 +12,7 @@ repos:
       - id: check-toml
       - id: check-added-large-files
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.4.3
+    rev: v0.6.2
     hooks:
       - id: ruff
         args: [ --fix ]
diff --git a/CHANGES.rst b/CHANGES.rst
index e4e26503..6bc4c2ee 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -1,3 +1,16 @@
+24.1.0 (September 16, 2024)
+===========================
+New feature release in the 24.1.x series.
+
+Handling of gradient echo fieldmaps is improved.
+
+  * FIX: Select volumetric dseg.tsv from recent TemplateFlow releases (#3257)
+  * RF: Adapt to less T1w-centric smriprep (#3333)
+  * RF: Use acres over vendored data loader (#3323)
+  * DOC: Add benchmark page (#3312)
+  * MAINT: Move to tox to simplify test/CI setup (#3326)
+  * CI: Fix expected outputs for fieldmaps (#3321)
+
 24.0.1 (July 16, 2024)
 ======================
 Bug fix release in the 24.0.x series.
diff --git a/Dockerfile b/Dockerfile
index 3dbe4c16..ad24aded 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -40,7 +40,7 @@ RUN python -m build /src
 #
 
 # Utilities for downloading packages
-FROM ${BASE_IMAGE} as downloader
+FROM ${BASE_IMAGE} AS downloader
 # Bump the date to current to refresh curl/certificates/etc
 RUN echo "2023.07.20"
 RUN apt-get update && \
@@ -53,13 +53,13 @@ RUN apt-get update && \
     apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
 
 # FreeSurfer 7.3.2
-FROM downloader as freesurfer
+FROM downloader AS freesurfer
 COPY docker/files/freesurfer7.3.2-exclude.txt /usr/local/etc/freesurfer7.3.2-exclude.txt
 RUN curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.3.2/freesurfer-linux-ubuntu22_amd64-7.3.2.tar.gz \
      | tar zxv --no-same-owner -C /opt --exclude-from=/usr/local/etc/freesurfer7.3.2-exclude.txt
 
 # AFNI
-FROM downloader as afni
+FROM downloader AS afni
 # Bump the date to current to update AFNI
 RUN echo "2023.07.20"
 RUN mkdir -p /opt/afni-latest \
@@ -80,7 +80,7 @@ RUN mkdir -p /opt/afni-latest \
         -name "3dvolreg" \) -delete
 
 # Connectome Workbench 1.5.0
-FROM downloader as workbench
+FROM downloader AS workbench
 RUN mkdir /opt/workbench && \
     curl -sSLO https://www.humanconnectome.org/storage/app/media/workbench/workbench-linux64-v1.5.0.zip && \
     unzip workbench-linux64-v1.5.0.zip -d /opt && \
@@ -89,13 +89,13 @@ RUN mkdir /opt/workbench && \
     strip --remove-section=.note.ABI-tag /opt/workbench/libs_linux64/libQt5Core.so.5
 
 # Convert3d 1.4.0
-FROM downloader as c3d
+FROM downloader AS c3d
 RUN mkdir /opt/convert3d && \
     curl -fsSL --retry 5 https://sourceforge.net/projects/c3d/files/c3d/Experimental/c3d-1.4.0-Linux-gcc64.tar.gz/download \
     | tar -xz -C /opt/convert3d --strip-components 1
 
 # Micromamba
-FROM downloader as micromamba
+FROM downloader AS micromamba
 
 # Install a C compiler to build extensions when needed.
 # traits<6.4 wheels are not available for Python 3.11+, but build easily.
@@ -119,13 +119,13 @@ RUN micromamba create -y -f /tmp/env.yml && \
 # Check if this is still necessary when updating the base image.
 ENV PATH="/opt/conda/envs/fmriprep/bin:$PATH" \
     UV_USE_IO_URING=0
-RUN npm install -g svgo@^3.2.0 bids-validator@^1.14.0 && \
+RUN npm install -g svgo@^3.2.0 bids-validator@1.14.10 && \
     rm -r ~/.npm
 
 #
 # Main stage
 #
-FROM ${BASE_IMAGE} as fmriprep
+FROM ${BASE_IMAGE} AS fmriprep
 
 # Configure apt
 ENV DEBIAN_FRONTEND="noninteractive" \
diff --git a/env.yml b/env.yml
index 91103e04..553eed34 100644
--- a/env.yml
+++ b/env.yml
@@ -15,12 +15,12 @@ dependencies:
   # Base scientific python stack; required by FSL, so pinned here
   - numpy=1.26
   - scipy=1.13
-  - matplotlib=3.8
+  - matplotlib=3.9
   - pandas=2.2
   - h5py=3.11
   # Dependencies compiled against numpy, best to stick with conda
   - nitime=0.10
-  - scikit-image=0.23
+  - scikit-image=0.24
   - scikit-learn=1.4
   # Utilities
   - graphviz=9.0
diff --git a/fmriprep/workflows/bold/resampling.py b/fmriprep/workflows/bold/resampling.py
index 1074700d..d725da6f 100644
--- a/fmriprep/workflows/bold/resampling.py
+++ b/fmriprep/workflows/bold/resampling.py
@@ -575,10 +575,10 @@ def init_bold_fsLR_resampling_wf(
         Path to BOLD series resampled as functional GIFTI files in fsLR space
 
     """
+    import smriprep.data
     import templateflow.api as tf
     from niworkflows.engine.workflows import LiterateWorkflow as Workflow
     from niworkflows.interfaces.utility import KeySelect
-    from smriprep import data as smriprep_data
 
     from fmriprep.interfaces.workbench import VolumeToSurfaceMapping
 
@@ -652,7 +652,7 @@ def init_bold_fsLR_resampling_wf(
             extension='.surf.gii',
         )
     ]
-    atlases = smriprep_data.load_resource('atlases')
+    atlases = smriprep.data.load('atlases')
     select_surfaces.inputs.template_roi = [
         str(atlases / f'L.atlasroi.{fslr_density}_fs_LR.shape.gii'),
         str(atlases / f'R.atlasroi.{fslr_density}_fs_LR.shape.gii'),
diff --git a/pyproject.toml b/pyproject.toml
index cbace073..59434ca0 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -23,18 +23,18 @@ dependencies = [
     "looseversion",
     "nibabel >= 4.0.1",
     "nipype >= 1.8.5",
-    "nireports @ git+https://github.com/nipreps/nireports.git@main",
+    "nireports >= 23.2.2",
     "nitime",
-    "nitransforms >= 21.0.0",
-    "niworkflows @ git+https://github.com/nipreps/niworkflows.git@master",
+    "nitransforms >= 21.0.0, != 24.0.0",
+    "niworkflows >= 1.11.0",
     "numpy >= 1.22",
     "packaging",
     "pandas",
     "psutil >= 5.4",
     "pybids >= 0.15.2",
     "requests",
-    "sdcflows @ git+https://github.com/nipreps/sdcflows.git@master",
-    "smriprep @ git+https://github.com/nipreps/smriprep.git@master",
+    "sdcflows >= 2.10.0",
+    "smriprep >= 0.16.0",
     "tedana >= 23.0.2",
     "templateflow >= 24.1.0",
     "transforms3d",
diff --git a/requirements.txt b/requirements.txt
index 55a28943..77ca1784 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,7 +1,10 @@
 # This file was autogenerated by uv via the following command:
 #    uv pip compile --extra=container --strip-extras pyproject.toml -o requirements.txt -p 3.11
 acres==0.1.0
-    # via fmriprep (pyproject.toml)
+    # via
+    #   fmriprep (pyproject.toml)
+    #   niworkflows
+    #   smriprep
 annexremote==1.6.5
     # via
     #   datalad
@@ -13,19 +16,23 @@ arrow==1.3.0
     # via codecarbon
 astor==0.8.1
     # via formulaic
-attrs==23.2.0
+attrs==24.2.0
     # via
+    #   jsonschema
     #   niworkflows
+    #   referencing
     #   sdcflows
 backports-tarfile==1.2.0
     # via jaraco-context
-bids-validator==1.14.6
+bids-validator==1.14.7.post0
     # via pybids
+bidsschematools==0.11.0
+    # via bids-validator
 bokeh==3.4.1
     # via tedana
-boto3==1.34.149
+boto3==1.35.4
     # via datalad
-botocore==1.34.149
+botocore==1.35.4
     # via
     #   boto3
     #   s3transfer
@@ -33,7 +40,7 @@ certifi==2024.7.4
     # via
     #   requests
     #   sentry-sdk
-cffi==1.16.0
+cffi==1.17.0
     # via cryptography
 chardet==5.2.0
     # via datalad
@@ -45,10 +52,12 @@ ci-info==0.3.0
     #   migas
 click==8.1.7
     # via
+    #   bidsschematools
     #   codecarbon
     #   nipype
     #   pybids
-codecarbon==2.5.0
+    #   typer
+codecarbon==2.6.0
     # via fmriprep (pyproject.toml)
 contourpy==1.2.1
     # via
@@ -58,7 +67,7 @@ cryptography==43.0.0
     # via secretstorage
 cycler==0.12.1
     # via matplotlib
-datalad==1.1.2
+datalad==1.1.3
     # via
     #   fmriprep (pyproject.toml)
     #   datalad-next
@@ -93,11 +102,11 @@ humanize==4.10.0
     #   datalad-next
 idna==3.7
     # via requests
-imageio==2.34.2
+imageio==2.35.1
     # via scikit-image
-importlib-metadata==8.2.0
+importlib-metadata==8.4.0
     # via keyring
-importlib-resources==6.4.0
+importlib-resources==6.4.4
     # via nireports
 indexed-gzip==1.8.7
     # via smriprep
@@ -111,11 +120,11 @@ jaraco-classes==3.4.0
     # via
     #   keyring
     #   keyrings-alt
-jaraco-context==5.3.0
+jaraco-context==6.0.1
     # via
     #   keyring
     #   keyrings-alt
-jaraco-functools==4.0.1
+jaraco-functools==4.0.2
     # via keyring
 jeepney==0.8.0
     # via
@@ -133,9 +142,13 @@ joblib==1.4.2
     # via
     #   nilearn
     #   scikit-learn
-keyring==25.2.1
+jsonschema==4.23.0
+    # via bidsschematools
+jsonschema-specifications==2023.12.1
+    # via jsonschema
+keyring==25.3.0
     # via datalad
-keyrings-alt==5.0.1
+keyrings-alt==5.0.2
     # via datalad
 kiwisolver==1.4.5
     # via matplotlib
@@ -152,16 +165,18 @@ looseversion==1.3.0
     #   nipype
     #   niworkflows
     #   smriprep
-lxml==5.2.2
+lxml==5.3.0
     # via
     #   nilearn
     #   prov
     #   svgutils
 mapca==0.0.5
     # via tedana
+markdown-it-py==3.0.0
+    # via rich
 markupsafe==2.1.5
     # via jinja2
-matplotlib==3.9.1
+matplotlib==3.9.2
     # via
     #   nireports
     #   nitime
@@ -169,11 +184,13 @@ matplotlib==3.9.1
     #   seaborn
     #   smriprep
     #   tedana
+mdurl==0.1.2
+    # via markdown-it-py
 migas==0.4.0
     # via
     #   fmriprep (pyproject.toml)
     #   sdcflows
-more-itertools==10.3.0
+more-itertools==10.4.0
     # via
     #   datalad-next
     #   jaraco-classes
@@ -211,15 +228,16 @@ nipype==1.8.6
     #   niworkflows
     #   sdcflows
     #   smriprep
-nireports==23.2.1
-nitime==0.11
+nireports==23.2.2
+    # via fmriprep (pyproject.toml)
+nitime==0.10.2
     # via fmriprep (pyproject.toml)
 nitransforms==23.0.1
     # via
     #   fmriprep (pyproject.toml)
     #   niworkflows
     #   sdcflows
-niworkflows==1.10.2
+niworkflows==1.11.0
     # via
     #   fmriprep (pyproject.toml)
     #   sdcflows
@@ -282,7 +300,7 @@ pandas==2.2.2
     #   pybids
     #   seaborn
     #   tedana
-patool==2.3.0
+patool==2.4.0
     # via datalad
 pillow==10.4.0
     # via
@@ -294,6 +312,8 @@ platformdirs==4.2.2
     # via datalad
 prometheus-client==0.20.0
     # via codecarbon
+prompt-toolkit==3.0.36
+    # via questionary
 prov==2.0.1
     # via nipype
 psutil==6.0.0
@@ -318,6 +338,8 @@ pycparser==2.22
     # via cffi
 pydot==3.0.1
     # via nipype
+pygments==2.18.0
+    # via rich
 pynvml==11.5.3
     # via codecarbon
 pyparsing==3.1.2
@@ -333,25 +355,32 @@ python-dateutil==2.9.0.post0
     #   nipype
     #   pandas
     #   prov
-python-gitlab==4.8.0
+python-gitlab==4.9.0
     # via datalad
 pytz==2024.1
     # via
     #   apscheduler
     #   pandas
-pyyaml==6.0.1
+pyyaml==6.0.2
     # via
+    #   bidsschematools
     #   bokeh
     #   nireports
     #   niworkflows
     #   pybtex
     #   smriprep
-rapidfuzz==3.9.5
+questionary==2.0.1
+    # via codecarbon
+rapidfuzz==3.9.6
     # via codecarbon
 rdflib==6.3.2
     # via
     #   nipype
     #   prov
+referencing==0.35.1
+    # via
+    #   jsonschema
+    #   jsonschema-specifications
 requests==2.32.3
     # via
     #   fmriprep (pyproject.toml)
@@ -365,6 +394,14 @@ requests==2.32.3
     #   templateflow
 requests-toolbelt==1.0.0
     # via python-gitlab
+rich==13.7.1
+    # via
+    #   codecarbon
+    #   typer
+rpds-py==0.20.0
+    # via
+    #   jsonschema
+    #   referencing
 s3transfer==0.10.2
     # via boto3
 scikit-image==0.24.0
@@ -390,16 +427,19 @@ scipy==1.13.0
     #   scikit-learn
     #   sdcflows
     #   tedana
-sdcflows==2.9.0
+sdcflows==2.10.0
+    # via fmriprep (pyproject.toml)
 seaborn==0.13.2
     # via
     #   nireports
     #   niworkflows
 secretstorage==3.3.3
     # via keyring
-sentry-sdk==2.11.0
+sentry-sdk==2.13.0
     # via fmriprep (pyproject.toml)
-simplejson==3.19.2
+shellingham==1.5.4
+    # via typer
+simplejson==3.19.3
     # via nipype
 six==1.16.0
     # via
@@ -408,8 +448,9 @@ six==1.16.0
     #   osfclient
     #   pybtex
     #   python-dateutil
-smriprep==0.15.0
-sqlalchemy==2.0.31
+smriprep==0.16.0
+    # via fmriprep (pyproject.toml)
+sqlalchemy==2.0.32
     # via pybids
 svgutils==0.3.4
     # via
@@ -428,7 +469,7 @@ threadpoolctl==3.5.0
     # via
     #   scikit-learn
     #   tedana
-tifffile==2024.7.24
+tifffile==2024.8.10
     # via scikit-image
 toml==0.10.2
     # via
@@ -436,7 +477,7 @@ toml==0.10.2
     #   sdcflows
 tornado==6.4.1
     # via bokeh
-tqdm==4.66.4
+tqdm==4.66.5
     # via
     #   datalad
     #   osfclient
@@ -451,12 +492,15 @@ transforms3d==0.4.2
     # via
     #   fmriprep (pyproject.toml)
     #   niworkflows
-types-python-dateutil==2.9.0.20240316
+typer==0.12.4
+    # via codecarbon
+types-python-dateutil==2.9.0.20240821
     # via arrow
 typing-extensions==4.12.2
     # via
     #   formulaic
     #   sqlalchemy
+    #   typer
 tzdata==2024.1
     # via pandas
 tzlocal==5.2
@@ -468,9 +512,11 @@ urllib3==2.2.2
     #   botocore
     #   requests
     #   sentry-sdk
+wcwidth==0.2.13
+    # via prompt-toolkit
 wrapt==1.16.0
     # via formulaic
 xyzservices==2024.6.0
     # via bokeh
-zipp==3.19.2
+zipp==3.20.0
     # via importlib-metadata