Do confound regression before rapidtide?

[tsalo]

What would you like to see added in fMRIPost-Rapidtide?

Would it make sense to do the confound regression before running rapidtide? It seems like it happens pretty early in the workflow, and that step overwrites the fmri_data_valid array, so it might be worth doing.

Do you have any interest in helping implement the feature?

Yes

Additional information / screenshots

No response

[bbfrederick]

Do you mean outside of the rapidtide program? We could - what is the advantage of doing that?

[tsalo]

This ties in with #11 (i.e., moving as many preparatory steps out of the rapidtide call as possible), but also I figured that we could plot FC inflation on the confound-denoised data if we do the confound regression separately from rapidtide.