From a7068a5f230e94c2c3e256fd4f490cf3331bda58 Mon Sep 17 00:00:00 2001
From: Taylor Salo <salot@pennmedicine.upenn.edu>
Date: Wed, 9 Oct 2024 14:11:59 -0400
Subject: [PATCH] Update rapidtide version.

---
 pyproject.toml                                  | 2 +-
 src/fmripost_rapidtide/tests/test_utils_bids.py | 8 ++++----
 "\342\200\216tests/data/ds000005-fmriprep"      | 1 +
 3 files changed, 6 insertions(+), 5 deletions(-)
 create mode 100644 "\342\200\216tests/data/ds000005-fmriprep"

diff --git a/pyproject.toml b/pyproject.toml
index 6d2ab73..ada8a8f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -24,7 +24,7 @@ dependencies = [
   "nitransforms == 23.0.1",
   "niworkflows @ git+https://github.com/nipreps/niworkflows.git@master",
   "pybids >= 0.15.6",
-  "rapidtide == 2.9.5.2",
+  "rapidtide == 2.9.8",
   "sdcflows @ git+https://github.com/nipreps/sdcflows.git@master",
   "smriprep @ git+https://github.com/nipreps/smriprep.git@master",
   "typer",
diff --git a/src/fmripost_rapidtide/tests/test_utils_bids.py b/src/fmripost_rapidtide/tests/test_utils_bids.py
index 5fb4040..89fa0a6 100644
--- a/src/fmripost_rapidtide/tests/test_utils_bids.py
+++ b/src/fmripost_rapidtide/tests/test_utils_bids.py
@@ -80,8 +80,8 @@ def test_collect_derivatives_minimal(minimal_ignore_list):
         # TODO: Add bold_mask_native to the dataset
         # 'bold_mask_native': 'sub-01_task-mixedgamblestask_run-01_desc-brain_mask.nii.gz',
         'bold_mask_native': None,
-        'confounds': None,
-        'hmc': (
+        'bold_confounds': None,
+        'bold_hmc': (
             'sub-01_task-mixedgamblestask_run-01_from-orig_to-boldref_mode-image_desc-hmc_xfm.txt'
         ),
         'boldref2anat': (
@@ -123,8 +123,8 @@ def test_collect_derivatives_full(full_ignore_list):
             'mask.nii.gz'
         ),
         'bold_mask_native': None,
-        'confounds': 'sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.tsv',
-        'hmc': (
+        'bold_confounds': 'sub-01_task-mixedgamblestask_run-01_desc-confounds_timeseries.tsv',
+        'bold_hmc': (
             'sub-01_task-mixedgamblestask_run-01_from-orig_to-boldref_mode-image_desc-hmc_xfm.txt'
         ),
         'boldref2anat': (
diff --git "a/\342\200\216tests/data/ds000005-fmriprep" "b/\342\200\216tests/data/ds000005-fmriprep"
new file mode 100644
index 0000000..1bd947b
--- /dev/null
+++ "b/\342\200\216tests/data/ds000005-fmriprep"
@@ -0,0 +1 @@
+Subproject commit caeb5acc567ddc94846bfa9e801088a7be3085c0