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note on input/output and shell commands #30

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ctb opened this issue Jul 9, 2023 · 1 comment

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ctb commented Jul 9, 2023

snakemake input and output don't have to be explicitly passed into the shell. they document what is going on, but don't dictate it.

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ctb commented Jul 9, 2023

maybe write a rule that uses them, hardcodes them, and then has them in a shell script but implicitly?

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