tags
ggg, ggg2023, ggg298

Running workflows in multiple languages & using data analysis notebooks - GGG 298 - Week 10, part 2!

Part 1 is HERE.

Running RStudio Server on farm in a custom conda environment

Close out of RStudio server.

Hit CTRL-C to kill rstudio-launch.

Now, in the sourmash compare directory, run:

cd ~/2023-ggg298-sourmash-compare/
mamba env create -n lab10 -f binder/environment.yml

Once that finishes, run:

mamba activate lab10

and now run

module load rstudio-server/2022.12.0
rstudio-launch

and reconnect as usual with ssh tunneling etc.

Now "knitting" should work 🎉!

Try:

Can you run everything there, too?

(It's the same repository, same code, same... everything!)