You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Pipelines are only tested with Docker. We should add tests with Singularity and Conda too.
Test with Singularity and Conda only on PRs to master + workflow dispatch. To avoid running the tests too often.
Linting: Singularity should be required, but Conda must be optional (opt-out) for pipelines which use custom Docker containers.
The text was updated successfully, but these errors were encountered:
Kinda a seperate issue but thought it might be a good place for the discussion.
I was thinking about this in terms of nf-core/modules.
Since we use the merge_queue, what if we only ran singularity and conda when the merge_queue is ran? It seems like the conda environment creation in some modules takes a really long time to get created(and in nf-test it creates the environment every time).
Description of feature
Pipelines are only tested with Docker. We should add tests with Singularity and Conda too.
Test with Singularity and Conda only on PRs to master + workflow dispatch. To avoid running the tests too often.
Linting: Singularity should be required, but Conda must be optional (opt-out) for pipelines which use custom Docker containers.
The text was updated successfully, but these errors were encountered: