Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Implement pathway analysis using EnrichR #4

Open
Tracked by #3
nictru opened this issue Jun 13, 2024 · 2 comments
Open
Tracked by #3

Implement pathway analysis using EnrichR #4

nictru opened this issue Jun 13, 2024 · 2 comments
Labels
enhancement New feature or request
Milestone
Stable transcript...

Comments

@nictru
Copy link
Contributor

nictru commented Jun 13, 2024 •
edited
Loading

Can be based on the implementation in scFlow
@nictru nictru mentioned this issue Jun 13, 2024
Open
@nictru nictru added the enhancement New feature or request label Jun 13, 2024
@nictru nictru added this to the Stable transcriptomics milestone Jun 13, 2024
@grst
Copy link
Member

grst commented Jun 13, 2024

or go with decoupler-py?

@nictru
Copy link
Contributor Author

nictru commented Jun 13, 2024

You are too fast for me - I am currently creating issues for all the methods that were implemented in the base pipelines, this is one that we would only have to adapt from scFlow.
The way I imagine this is to have multiple alternatives for various tasks. You probably know a lot more useful packages than I do, feel free to add them to the corresponding overview issues (#3 in this case)

@alexblaessle alexblaessle mentioned this issue Sep 6, 2024
Open
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement New feature or request
Projects
None yet
Milestone
Stable transcriptomics
Development

No branches or pull requests
2 participants
@grst @nictru