diff --git a/subworkflows/local/variant_calling/call_sv_germlinecnvcaller.nf b/subworkflows/local/variant_calling/call_sv_germlinecnvcaller.nf index 9f84da4c..566bfc2e 100644 --- a/subworkflows/local/variant_calling/call_sv_germlinecnvcaller.nf +++ b/subworkflows/local/variant_calling/call_sv_germlinecnvcaller.nf @@ -67,8 +67,6 @@ workflow CALL_SV_GERMLINECNVCALLER { .combine(vcf_file_list) .set { merge_input_vcfs } - merge_input_vcfs - SVDB_MERGE_GCNVCALLER ( merge_input_vcfs, [] ) ch_versions = ch_versions.mix(GATK4_COLLECTREADCOUNTS.out.versions)