diff --git a/CHANGELOG.md b/CHANGELOG.md
index 6a5f5f94..0d4b086b 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,6 +7,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Added`
 
+### `Changed`
+
+- Tiddit updated to v3.6.1 [#385](https://github.com/nf-core/sarek/pull/385)
+
 ### `Fixed`
 
 ## v1.1.0 - Abu [2023-07-21]
diff --git a/modules.json b/modules.json
index da9ac319..ef81841f 100644
--- a/modules.json
+++ b/modules.json
@@ -367,12 +367,12 @@
                     },
                     "tiddit/cov": {
                         "branch": "master",
-                        "git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013",
+                        "git_sha": "1c90a501d102b800c27697f5ef39a6e217ab1915",
                         "installed_by": ["modules"]
                     },
                     "tiddit/sv": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "1c90a501d102b800c27697f5ef39a6e217ab1915",
                         "installed_by": ["modules"]
                     },
                     "ucsc/wigtobigwig": {
diff --git a/modules/nf-core/tiddit/cov/main.nf b/modules/nf-core/tiddit/cov/main.nf
index 647f35a2..f4b1d675 100644
--- a/modules/nf-core/tiddit/cov/main.nf
+++ b/modules/nf-core/tiddit/cov/main.nf
@@ -2,10 +2,10 @@ process TIDDIT_COV {
     tag "$meta.id"
     label 'process_low'
 
-    conda "bioconda::tiddit=3.3.2"
+    conda "bioconda::tiddit=3.6.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/tiddit:3.3.2--py310hc2b7f4b_0' :
-        'biocontainers/tiddit:3.3.2--py310hc2b7f4b_0' }"
+        'https://depot.galaxyproject.org/singularity/tiddit:3.6.1--py38h24c8ff8_0' :
+        'biocontainers/tiddit:3.6.1--py38h24c8ff8_0' }"
 
     input:
     tuple val(meta), path(input)
diff --git a/modules/nf-core/tiddit/sv/main.nf b/modules/nf-core/tiddit/sv/main.nf
index 1ebc8565..67a0670d 100644
--- a/modules/nf-core/tiddit/sv/main.nf
+++ b/modules/nf-core/tiddit/sv/main.nf
@@ -2,10 +2,10 @@ process TIDDIT_SV {
     tag "$meta.id"
     label 'process_medium'
 
-    conda "bioconda::tiddit=3.3.2"
+    conda "bioconda::tiddit=3.6.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/tiddit:3.3.2--py310hc2b7f4b_0' :
-        'biocontainers/tiddit:3.3.2--py310hc2b7f4b_0' }"
+        'https://depot.galaxyproject.org/singularity/tiddit:3.6.1--py38h24c8ff8_0' :
+        'biocontainers/tiddit:3.6.1--py38h24c8ff8_0' }"
 
     input:
     tuple val(meta), path(input), path(input_index)