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ASCAT.sc is a variant of ASCAT which can work on single-cell data, and also with shallow whole-genome sequencing (sWGS), among other things.
We already have a prototype module for one of our recently released pipelines (SAMURAI), so this would probably simplify the addition. However a major problem is that currently ASCAT.sc lacks a release. Internally we run on the latest snapshot from the master branch using Docker, but I don't think this would be viable as it is.
(I plan on working on this during the Barcelona hackathon; I can't find the instructions anymore so I don't remember if I should add it to Projects or not)
Are you going to work on this?
If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module
The text was updated successfully, but these errors were encountered:
Is there an existing module for this?
Is there an open PR for this?
Is there an open issue for this?
Further Information
ASCAT.sc is a variant of ASCAT which can work on single-cell data, and also with shallow whole-genome sequencing (sWGS), among other things.
We already have a prototype module for one of our recently released pipelines (SAMURAI), so this would probably simplify the addition. However a major problem is that currently ASCAT.sc lacks a release. Internally we run on the latest snapshot from the
master
branch using Docker, but I don't think this would be viable as it is.(I plan on working on this during the Barcelona hackathon; I can't find the instructions anymore so I don't remember if I should add it to Projects or not)
Are you going to work on this?
Assignees
to facilitate tracking who is working on the moduleThe text was updated successfully, but these errors were encountered: