From 94ae259d776e2b715a2829d3919d1642e40e8155 Mon Sep 17 00:00:00 2001
From: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
Date: Tue, 17 Sep 2024 07:08:57 +0100
Subject: [PATCH] Stop nf-test complaining about missing dependency (#6652)

* Finish filepaths

* Fix tags
---
 modules/nf-core/ltrfinder/tests/main.nf.test     |  4 ++--
 .../ltrretriever/ltrretriever/tests/main.nf.test | 16 ++++++++--------
 2 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/modules/nf-core/ltrfinder/tests/main.nf.test b/modules/nf-core/ltrfinder/tests/main.nf.test
index f971f7bb1f7..dc8c8033d35 100644
--- a/modules/nf-core/ltrfinder/tests/main.nf.test
+++ b/modules/nf-core/ltrfinder/tests/main.nf.test
@@ -7,13 +7,13 @@ nextflow_process {
     tag "modules"
     tag "modules_nfcore"
     tag "ltrfinder"
-    tag "gunzip/main"
+    tag "gunzip"
 
     test("actinidia_chinensis-genome_21_fasta_gz-success") {
 
         setup {
             run('GUNZIP') {
-                script "../../gunzip/main"
+                script "../../gunzip/main.nf"
 
                 process {
                     """
diff --git a/modules/nf-core/ltrretriever/ltrretriever/tests/main.nf.test b/modules/nf-core/ltrretriever/ltrretriever/tests/main.nf.test
index 5f67ff168d1..4d512f3693d 100644
--- a/modules/nf-core/ltrretriever/ltrretriever/tests/main.nf.test
+++ b/modules/nf-core/ltrretriever/ltrretriever/tests/main.nf.test
@@ -9,7 +9,7 @@ nextflow_process {
     tag "modules_nfcore"
     tag "ltrretriever"
     tag "ltrretriever/ltrretriever"
-    tag "gunzip/main"
+    tag "gunzip"
     tag "ltrharvest"
     tag "ltrfinder"
     tag "cat/cat"
@@ -19,7 +19,7 @@ nextflow_process {
         setup {
 
             run("LTRHARVEST") {
-                script "../../../ltrharvest"
+                script "../../../ltrharvest/main.nf"
 
                 process {
                     """
@@ -32,7 +32,7 @@ nextflow_process {
             }
 
             run("LTRFINDER") {
-                script "../../../ltrfinder"
+                script "../../../ltrfinder/main.nf"
 
                 process {
                     """
@@ -45,7 +45,7 @@ nextflow_process {
             }
 
             run("CAT_CAT") {
-                script "../../../cat/cat"
+                script "../../../cat/cat/main.nf"
 
                 process {
                     """
@@ -85,7 +85,7 @@ nextflow_process {
         setup {
 
             run('GUNZIP') {
-                script "../../../gunzip/main"
+                script "../../../gunzip/main.nf"
 
                 process {
                     """
@@ -98,7 +98,7 @@ nextflow_process {
             }
 
             run("LTRHARVEST") {
-                script "../../../ltrharvest"
+                script "../../../ltrharvest/main.nf"
 
                 process {
                     """
@@ -108,7 +108,7 @@ nextflow_process {
             }
 
             run("LTRFINDER") {
-                script "../../../ltrfinder"
+                script "../../../ltrfinder/main.nf"
 
                 process {
                     """
@@ -118,7 +118,7 @@ nextflow_process {
             }
 
             run("CAT_CAT") {
-                script "../../../cat/cat"
+                script "../../../cat/cat/main.nf"
 
                 process {
                     """