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Not converting to full nf-core modules, but rather converting from python scripts that run as separate (local) modules in the workflow into .nf scripts that run as part of the workflow itself (see subworkflows/local/utils_nfcore_mcmicro_pipeline/main.nf).
I have updated code for this in my fork in branch 'input_validation'. I'll make a PR once #29 has been merged.
It still needs a little work. I'm unsure about how to proceed in a few places, so we can discuss that and any changes you'd like in the PR.
Description of feature
move bin/check_marker_sheet.py and bin/check_sample_and_marker_sheet.py to groovy
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