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Installation issues - airrflow pipeline #341
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Hi @pnatarajan9 , I could not reproduce this error, I just tried pulling this container and it is available for me. Could you try if this works for you:
If this doesn't work, it could be that docker is not properly installed or that your system has no internet connection, which is needed to pull the containers. If this works, but airrflow continues to fail, could you share the full command you used to run it? |
Full command used and the errors: $ nf-core download airrflow --outdir dev --singularity-cache-only --container singularity ? Select release / branch: 4.1.0 [release] If transferring the downloaded files to another system, it can be convenient to have everything compressed in a single file. |
Hi @pnatarajan9, I tested this command with the latest version of the nf-core tools (
Inside the tar archive the cellranger container was also downloaded properly. Did you try updating the nf-core tools? |
Yes, we tried the installation with the latest version of the nf-core tools (2.14.1) and are getting similar errors: |
Update: We were able to install airrflow with the nf-core version 2.14.1 in different compute environment. Thank you for your help! |
Great to hear that your issue has been solved! |
Description of the bug
Airrflow - https://github.com/nf-core/airrflow
CRITICAL The container "nf-core/cellranger:7.1.0" is unavailable.
WARNING: Couldn't use cached digest for registry: HEAD https://index.docker.io/v2/nf-core/cellranger/manifests/7.1.0:
unexpected status code 401 Unauthorized (HEAD responses have no body, use GET for details)
WARNING: Falling back to direct digest.
FATAL: While making image from oci registry: error fetching image to cache: failed to get checksum for
docker://nf-core/cellranger:7.1.0: GET https://index.docker.io/v2/nf-core/cellranger/manifests/7.1.0: UNAUTHORIZED:
authentication required; [map[Action:pull Class: Name:nf-core/cellranger Type:repository]]
Command used and terminal output
No response
Relevant files
No response
System information
Nextflow version - 23.04.1
nf-core version: 2.7.2
Ubuntu 22.04.4 LTS (GNU/Linux 6.5.0-28-generic x86_64)
nf-core airrflow version 4.1.0
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