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ENH: Add parent lineages as partiallyAliased column for recombinants #41

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corneliusroemer opened this issue Oct 4, 2022 · 2 comments
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enhancement New feature or request SARS-CoV-2 Related to SARS-CoV-2

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@corneliusroemer
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Would be great to add recombinant parent info to the partiallyAliased column in SC2 datasets

@corneliusroemer corneliusroemer added the enhancement New feature or request label Oct 4, 2022
@corneliusroemer
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In addition, it would be good to have the full aliased name in the tooltip so as to make it possible to see what long names mean

Also, it would be nice to add full hierarchy of aliases in the tooltips to allow learning them without looking up - shouldn't be hard:

B.1.1.529.5.3.1.1.1.1.2
BA.5.3.1.1.1.1.2
BQ.1.1.1.2
DN.2

@corneliusroemer corneliusroemer added the SARS-CoV-2 Related to SARS-CoV-2 label Jan 30, 2023
@ivan-aksamentov
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Should be implementable with nextstrain/nextclade#985, which allows to display secondary clade-like node attrs in the tooltip.

Right now the values accepted are strings. That is 1 key (a string) corresponds to 1 value (a string). There might be a way to also assign lists if needed. Otherwise a workaround is to have a comma-separated list in a string.

@corneliusroemer corneliusroemer self-assigned this Feb 14, 2023
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Labels
enhancement New feature or request SARS-CoV-2 Related to SARS-CoV-2
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