From 954d8291f3a135a2c251fc7b22ff6d0fe3d1adef Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Fri, 16 Feb 2024 04:00:41 +0000 Subject: [PATCH] chore: release 2024-02-16--04-00-32Z Updated datasets: - SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs) - SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins) - SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2) - SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB) - SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86) - PRRSV-2 ORF5 Lineages, Yim-im & Zhang 2023 Microbiol Spectr (community/isuvdl/mazeller/prrsv2/orf5/yimim2023) --- .../prrsv2/orf5/yimim2023/CHANGELOG.md | 2 +- .../sars-cov-2/BA.2.86/CHANGELOG.md | 2 +- data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md | 2 +- data/nextstrain/sars-cov-2/XBB/CHANGELOG.md | 2 +- .../sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md | 2 +- .../wuhan-hu-1/proteins/CHANGELOG.md | 2 +- .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 344586 -> 344599 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 data_output/index.json | 36 ++++++++++++------ .../2024-02-16--04-00-32Z}/CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 1263175 -> 1263179 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 1645039 -> 1645043 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../2024-02-16--04-00-32Z}/CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 1432079 -> 1432083 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 1313592 -> 1313599 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 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rename data_output/nextstrain/sars-cov-2/BA.2/{unreleased => 2024-02-16--04-00-32Z}/tree.json (100%) rename data_output/nextstrain/sars-cov-2/{BA.2.86/unreleased => XBB/2024-02-16--04-00-32Z}/CHANGELOG.md (98%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-02-16--04-00-32Z}/README.md (100%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-02-16--04-00-32Z}/dataset.zip (99%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-02-16--04-00-32Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-02-16--04-00-32Z}/pathogen.json (99%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-02-16--04-00-32Z}/reference.fasta (100%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-02-16--04-00-32Z}/sequences.fasta (100%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-02-16--04-00-32Z}/tree.json (100%) rename 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b/data/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/CHANGELOG.md index 1ba5f94a..7ee7b5c2 100644 --- a/data/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/CHANGELOG.md +++ b/data/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-02-16T04:00:32Z Initial release for Nextclade v3! diff --git a/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md b/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md index e0771fef..d6d56dd2 100644 --- a/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-02-16T04:00:32Z - All 35 Pango lineages designated between 2024-01-16 and 2024-02-12 are now included, unfold below to see a list of all newly included lineages with their designation dates: diff --git a/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md b/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md index 19bb552a..a84bb2b4 100644 --- a/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-02-16T04:00:32Z - All 35 Pango lineages designated between 2024-01-16 and 2024-02-12 are now included, unfold below to see a list of all newly included lineages with their designation dates: diff --git a/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md b/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md index e0771fef..d6d56dd2 100644 --- a/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-02-16T04:00:32Z - All 35 Pango lineages designated between 2024-01-16 and 2024-02-12 are now included, unfold below to see a list of all newly included lineages with their designation dates: diff --git a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md index ccb58add..c1bf2738 100644 --- a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-02-16T04:00:32Z - All 35 Pango lineages designated between 2024-01-16 and 2024-02-12 are now included, unfold below to see a list of all newly included lineages with their designation dates: diff --git a/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md b/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md index 217801c3..da5d952f 100644 --- a/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-02-16T04:00:32Z - All 35 Pango lineages designated between 2024-01-16 and 2024-02-12 are now included, unfold below to see a list of all newly included lineages with their designation dates: diff --git a/data_output/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/unreleased/CHANGELOG.md b/data_output/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/2024-02-16--04-00-32Z/CHANGELOG.md similarity index 90% rename from data_output/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/unreleased/CHANGELOG.md rename to data_output/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/2024-02-16--04-00-32Z/CHANGELOG.md index 1ba5f94a..7ee7b5c2 100644 --- a/data_output/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/unreleased/CHANGELOG.md +++ b/data_output/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/2024-02-16--04-00-32Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-02-16T04:00:32Z Initial release for Nextclade v3! diff --git a/data_output/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/unreleased/README.md b/data_output/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/2024-02-16--04-00-32Z/README.md similarity index 100% rename from data_output/community/isuvdl/mazeller/prrsv2/orf5/yimim2023/unreleased/README.md rename to 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b/data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/pathogen.json similarity index 99% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/pathogen.json rename to data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/pathogen.json index 24f9a790..0641f3a4 100644 --- a/data_output/nextstrain/sars-cov-2/XBB/unreleased/pathogen.json +++ b/data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/pathogen.json @@ -2690,7 +2690,8 @@ }, "schemaVersion": "3.0.0", "version": { - "tag": "unreleased", + "updatedAt": "2024-02-16T04:00:32Z", + "tag": "2024-02-16--04-00-32Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/reference.fasta b/data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/reference.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/reference.fasta rename to data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/reference.fasta diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/sequences.fasta b/data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/sequences.fasta rename to data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/sequences.fasta diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/tree.json b/data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/tree.json similarity index 100% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/tree.json rename to data_output/nextstrain/sars-cov-2/XBB/2024-02-16--04-00-32Z/tree.json diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/CHANGELOG.md b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-02-16--04-00-32Z/CHANGELOG.md similarity index 98% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/CHANGELOG.md rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-02-16--04-00-32Z/CHANGELOG.md index ccb58add..c1bf2738 100644 --- a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-02-16--04-00-32Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-02-16T04:00:32Z - All 35 Pango lineages designated between 2024-01-16 and 2024-02-12 are now included, unfold below to see a list of all newly included lineages with their designation dates: diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/README.md 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