From 5e6569a998aa40a77386b0da559908114d49e19c Mon Sep 17 00:00:00 2001
From: Victor Lin <13424970+victorlin@users.noreply.github.com>
Date: Mon, 26 Feb 2024 14:23:01 -0800
Subject: [PATCH] Highlight Snakemake as an implementation detail

---
 docs/usage/cli/filter.rst | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/docs/usage/cli/filter.rst b/docs/usage/cli/filter.rst
index fa47f6dda..944d83ff3 100644
--- a/docs/usage/cli/filter.rst
+++ b/docs/usage/cli/filter.rst
@@ -134,11 +134,12 @@ and ``--include`` to sample the data based on the intermediate strain list
 files. If the same strain appears in both files, ``augur filter`` will only
 write it once in each of the final outputs.
 
-Stitching calls together with Snakemake
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+Generalizing subsampling in a workflow
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-The approach above can be cumbersome with more intermediate samples. There is a
-more flexible approach using `Snakemake`_.
+The approach above can be cumbersome with more intermediate samples. To
+generalize this process and allow for more flexibility, a workflow management
+system can be used. The following examples use `Snakemake`_.
 
 1. Add a section in the `config file`_.