From c9a36b6483c43077c32af75bb15646a9214b6a21 Mon Sep 17 00:00:00 2001
From: Nicolas Vannieuwkerke <101190534+nvnieuwk@users.noreply.github.com>
Date: Thu, 6 Jul 2023 15:32:05 +0200
Subject: [PATCH] Update bcftools query (#3605)

* new module picard/scatterintervalsbyns

* update annotsv to 3.3.6

* update installannotations

* update output of bcftools query
---
 modules/nf-core/bcftools/query/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/nf-core/bcftools/query/main.nf b/modules/nf-core/bcftools/query/main.nf
index ba347fb16c1..bff3654cd95 100644
--- a/modules/nf-core/bcftools/query/main.nf
+++ b/modules/nf-core/bcftools/query/main.nf
@@ -34,7 +34,7 @@ process BCFTOOLS_QUERY {
         $samples_file \\
         $args \\
         $vcf \\
-        > ${prefix}.txt
+        > ${prefix}.${suffix}
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":