From 586a531707a1383f11850d9ff60b1934736a3374 Mon Sep 17 00:00:00 2001 From: mauraisa Date: Mon, 16 Sep 2024 11:04:55 -0700 Subject: [PATCH] Emit minimized and un-minimized final Skyline document from workflows/skyline_import.nf --- workflows/skyline_import.nf | 17 ++++++++++++----- 1 file changed, 12 insertions(+), 5 deletions(-) diff --git a/workflows/skyline_import.nf b/workflows/skyline_import.nf index 9e944b7..ec15da7 100644 --- a/workflows/skyline_import.nf +++ b/workflows/skyline_import.nf @@ -17,6 +17,9 @@ workflow skyline_import { emit: skyline_results + skyline_results_hash + skyline_minimized_results + skyline_minimized_results_hash proteowizard_version main: @@ -43,16 +46,20 @@ workflow skyline_import { ANNOTATION_TSV_TO_CSV.out.annotation_csv, ANNOTATION_TSV_TO_CSV.out.annotation_definitions) - sky_minimize_input = SKYLINE_ANNOTATE_DOCUMENT.out.final_skyline_zipfile + skyline_results = SKYLINE_ANNOTATE_DOCUMENT.out.final_skyline_zipfile + skyline_results_hash = SKYLINE_ANNOTATE_DOCUMENT.out.file_hash } else { - sky_minimize_input = SKYLINE_MERGE_RESULTS.out.final_skyline_zipfile + skyline_results = SKYLINE_MERGE_RESULTS.out.final_skyline_zipfile + skyline_results_hash = SKYLINE_MERGE_RESULTS.out.file_hash } if(params.skyline.minimize) { - SKYLINE_MINIMIZE_DOCUMENT(sky_minimize_input) - skyline_results = SKYLINE_MINIMIZE_DOCUMENT.out.final_skyline_zipfile + SKYLINE_MINIMIZE_DOCUMENT(skyline_results) + skyline_minimized_results = SKYLINE_MINIMIZE_DOCUMENT.out.final_skyline_zipfile + skyline_minimized_results_hash = SKYLINE_MINIMIZE_DOCUMENT.out.file_hash } else { - skyline_results = sky_minimize_input + skyline_minimized_results = Channel.empty() + skyline_minimized_results_hash = Channel.empty() } proteowizard_version = SKYLINE_ADD_LIB.out.version