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"Only output files may be temporary" #20

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spimager opened this issue May 7, 2016 · 1 comment
Open

"Only output files may be temporary" #20

spimager opened this issue May 7, 2016 · 1 comment

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@spimager
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spimager commented May 7, 2016

I keep getting the following error:
SyntaxError:
Only output files may be temporary
File "/data/Data/snakemake-workflows/spim_registration/timelapse/Snakefile", line 177, in

Is there a particular workaround for this problem? I've trawled through the config file and the snakefile and can't seem to find anything wrong at all.

Perhaps it's the python or snakemake version? I tried Python 3.4 and 3.5 as well as the latest Snakemake build (3.7.0) and 3.5.0.

Any ideas?

@schmiedc
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Fixed with the newest commit: bc58f74

Temporary files are not removed anymore.

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