Migration table: add provenance to definitions!

[matentzn]

Right now the migration (slurp) tables dont add provenance to definitions, they should!

[joeflack4]

@matentzn How would you like to see this done?

Here's an example of a term w/ a definition now (DOID:0081461):
slurp/doid.tsv:

mondo_id	mondo_label	xref	xref_source	original_label	definition	parents
ID	LABEL	A oboInOwl:hasDbXref	>A oboInOwl:source SPLIT="			A IAO:0000115
MONDO:0971037	thyroid gland spindle epithelial tumor with thymus-like elements	DOID:0081461	MONDO:equivalentTo	thyroid gland spindle epithelial tumor with thymus-like elements	A thyroid gland carcinoma that is characterized by a lobulated architectural pattern and the presence of a biphasic cellular population composed of spindle epithelial cells and glandular cells.	MONDO:0015075

components/doid.owl:

    <owl:Class rdf:about="http://purl.obolibrary.org/obo/DOID_0081461">
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/DOID_3963"/>
        <obo:IAO_0000115>A thyroid gland carcinoma that is characterized by a lobulated architectural pattern and the presence of a biphasic cellular population composed of spindle epithelial cells and glandular cells.</obo:IAO_0000115>
        <oboInOwl:hasDbXref>NCI:C46105</oboInOwl:hasDbXref>
        <oboInOwl:hasExactSynonym>SETTLE</oboInOwl:hasExactSynonym>
        ...
        <rdfs:label xml:lang="en">thyroid gland spindle epithelial tumor with thymus-like elements</rdfs:label>
    </owl:Class>

The definition in the TSV is:

A thyroid gland carcinoma that is characterized by a lobulated architectural pattern and the presence of a biphasic cellular population composed of spindle epithelial cells and glandular cells.

Are you saying that we should append any oio:hasDbXref (or potentially other predicates) to the definitions?

[matentzn]

See definition_evidence column

mondo_id	mondo_label	xref	xref_source	original_label	definition	definition_evidence	parents
ID	LABEL	A oboInOwl:hasDbXref	>A oboInOwl:source SPLIT=|		A IAO:0000115	>A oboInOwl:hasDbXref SPLIT=|	SC %
MONDO:0971037	thyroid gland spindle epithelial tumor with thymus-like elements	DOID:0081461	MONDO:equivalentTo	thyroid gland spindle epithelial tumor with thymus-like elements	A thyroid gland carcinoma that is characterized by a lobulated architectural pattern and the presence of a biphasic cellular population composed of spindle epithelial cells and glandular cells.	DOID:0081461	MONDO:0015075

[joeflack4]

Ahhh, I see. That will be very easy to add.

Although note, I see it has SPLIT=|. The way that the migrate pipeline works currently, if I add this, I think it's only ever going to have 1 CURIE in that column, the same curie as in the xref column. I assume that is OK.

[matentzn]

No harm with the SPLIT=| just a reflex to making it future proof.