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HPOA ingest mis-maps some evidence types #827

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cmungall opened this issue Sep 27, 2024 · 0 comments
Open

HPOA ingest mis-maps some evidence types #827

cmungall opened this issue Sep 27, 2024 · 0 comments
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cmungall commented Sep 27, 2024

PCS, ICE getting mapped incorrectly

I think this dates from pre-2016

ECO has had the right codes for a while

evidenceontology/evidenceontology#106

eg

id: ECO:0006017
name: author statement supported from referenced clinical study used in manual assertion
def: "A type of author statement supported from referenced clinical study that is used in a manual assertion." []
comment: Created and used by the Human Phenotype Ontology (HPO) Annotations group. Here it is used when evidence for an HPO annotation is information extracted from articles in the medical literature.
synonym: "PCS" EXACT [HPO:PCS]
synonym: "published clinical study evidence" BROAD []
is_a: ECO:0000304 {is_inferred="true"} ! author statement supported by traceable reference used in manual assertion
is_a: ECO:0006016 ! author statement supported from referenced clinical study
intersection_of: ECO:0006016 ! author statement supported from referenced clinical study
intersection_of: used_in ECO:0000218 ! manual assertion
property_value: seeAlso http://human-phenotype-ontology.github.io/documentation.html#annot xsd:string
created_by: rctauber
creation_date: 2016-11-30T09:44:47Z
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