diff --git a/.buildinfo b/.buildinfo
index f738e16..a3269c3 100644
--- a/.buildinfo
+++ b/.buildinfo
@@ -1,4 +1,4 @@
# Sphinx build info version 1
-# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: edd266f8b85f32302a9b56e7c8909917
+# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 727a346649e8f140a23ff6388ebd638b
tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_modules/index.html b/_modules/index.html
index 74ed568..acdef24 100644
--- a/_modules/index.html
+++ b/_modules/index.html
@@ -7,7 +7,7 @@
- Overview: module code — SEAMM Loop Plug-in 2024.8.23 documentation
+ Overview: module code — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -45,8 +45,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/_modules/loop_step/loop.html b/_modules/loop_step/loop.html
index 4a2060f..108fbfe 100644
--- a/_modules/loop_step/loop.html
+++ b/_modules/loop_step/loop.html
@@ -7,7 +7,7 @@
- loop_step.loop — SEAMM Loop Plug-in 2024.8.23 documentation
+ loop_step.loop — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -45,8 +45,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
@@ -632,7 +632,7 @@ Source code for loop_step.loop
next_node = self.loop_node()
while next_node is not None and next_node != join_node:
text += "\n\n"
- text += __(next_node.description_text(), indent=4 * " ").__str__()
+ text += str(__(next_node.description_text(), indent=4 * " ", wrap=False))
next_node = next_node.next()
return text
diff --git a/_modules/loop_step/loop_parameters.html b/_modules/loop_step/loop_parameters.html
index a71a761..fc73ea6 100644
--- a/_modules/loop_step/loop_parameters.html
+++ b/_modules/loop_step/loop_parameters.html
@@ -7,7 +7,7 @@
- loop_step.loop_parameters — SEAMM Loop Plug-in 2024.8.23 documentation
+ loop_step.loop_parameters — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -45,8 +45,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/_modules/loop_step/loop_step.html b/_modules/loop_step/loop_step.html
index 3e36825..6ace162 100644
--- a/_modules/loop_step/loop_step.html
+++ b/_modules/loop_step/loop_step.html
@@ -7,7 +7,7 @@
- loop_step.loop_step — SEAMM Loop Plug-in 2024.8.23 documentation
+ loop_step.loop_step — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -45,8 +45,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/_modules/loop_step/tk_loop.html b/_modules/loop_step/tk_loop.html
index e28aeef..d6e99af 100644
--- a/_modules/loop_step/tk_loop.html
+++ b/_modules/loop_step/tk_loop.html
@@ -7,7 +7,7 @@
- loop_step.tk_loop — SEAMM Loop Plug-in 2024.8.23 documentation
+ loop_step.tk_loop — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -45,8 +45,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/_static/basic.css b/_static/basic.css
index 2af6139..2a9e411 100644
--- a/_static/basic.css
+++ b/_static/basic.css
@@ -1,12 +1,5 @@
/*
- * basic.css
- * ~~~~~~~~~
- *
* Sphinx stylesheet -- basic theme.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
*/
/* -- main layout ----------------------------------------------------------- */
@@ -115,15 +108,11 @@ img {
/* -- search page ----------------------------------------------------------- */
ul.search {
- margin: 10px 0 0 20px;
- padding: 0;
+ margin-top: 10px;
}
ul.search li {
- padding: 5px 0 5px 20px;
- background-image: url(file.png);
- background-repeat: no-repeat;
- background-position: 0 7px;
+ padding: 5px 0;
}
ul.search li a {
diff --git a/_static/doctools.js b/_static/doctools.js
index 4d67807..0398ebb 100644
--- a/_static/doctools.js
+++ b/_static/doctools.js
@@ -1,12 +1,5 @@
/*
- * doctools.js
- * ~~~~~~~~~~~
- *
* Base JavaScript utilities for all Sphinx HTML documentation.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
*/
"use strict";
diff --git a/_static/documentation_options.js b/_static/documentation_options.js
index 87ae279..ac29b67 100644
--- a/_static/documentation_options.js
+++ b/_static/documentation_options.js
@@ -1,5 +1,5 @@
const DOCUMENTATION_OPTIONS = {
- VERSION: '2024.8.23',
+ VERSION: '2024.10.15',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
diff --git a/_static/language_data.js b/_static/language_data.js
index 367b8ed..c7fe6c6 100644
--- a/_static/language_data.js
+++ b/_static/language_data.js
@@ -1,13 +1,6 @@
/*
- * language_data.js
- * ~~~~~~~~~~~~~~~~
- *
* This script contains the language-specific data used by searchtools.js,
* namely the list of stopwords, stemmer, scorer and splitter.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
*/
var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"];
diff --git a/_static/searchtools.js b/_static/searchtools.js
index b08d58c..2c774d1 100644
--- a/_static/searchtools.js
+++ b/_static/searchtools.js
@@ -1,12 +1,5 @@
/*
- * searchtools.js
- * ~~~~~~~~~~~~~~~~
- *
* Sphinx JavaScript utilities for the full-text search.
- *
- * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
- * :license: BSD, see LICENSE for details.
- *
*/
"use strict";
@@ -20,7 +13,7 @@ if (typeof Scorer === "undefined") {
// and returns the new score.
/*
score: result => {
- const [docname, title, anchor, descr, score, filename] = result
+ const [docname, title, anchor, descr, score, filename, kind] = result
return score
},
*/
@@ -47,6 +40,14 @@ if (typeof Scorer === "undefined") {
};
}
+// Global search result kind enum, used by themes to style search results.
+class SearchResultKind {
+ static get index() { return "index"; }
+ static get object() { return "object"; }
+ static get text() { return "text"; }
+ static get title() { return "title"; }
+}
+
const _removeChildren = (element) => {
while (element && element.lastChild) element.removeChild(element.lastChild);
};
@@ -64,9 +65,13 @@ const _displayItem = (item, searchTerms, highlightTerms) => {
const showSearchSummary = DOCUMENTATION_OPTIONS.SHOW_SEARCH_SUMMARY;
const contentRoot = document.documentElement.dataset.content_root;
- const [docName, title, anchor, descr, score, _filename] = item;
+ const [docName, title, anchor, descr, score, _filename, kind] = item;
let listItem = document.createElement("li");
+ // Add a class representing the item's type:
+ // can be used by a theme's CSS selector for styling
+ // See SearchResultKind for the class names.
+ listItem.classList.add(`kind-${kind}`);
let requestUrl;
let linkUrl;
if (docBuilder === "dirhtml") {
@@ -115,8 +120,10 @@ const _finishSearch = (resultCount) => {
"Your search did not match any documents. Please make sure that all words are spelled correctly and that you've selected enough categories."
);
else
- Search.status.innerText = _(
- "Search finished, found ${resultCount} page(s) matching the search query."
+ Search.status.innerText = Documentation.ngettext(
+ "Search finished, found one page matching the search query.",
+ "Search finished, found ${resultCount} pages matching the search query.",
+ resultCount,
).replace('${resultCount}', resultCount);
};
const _displayNextItem = (
@@ -138,7 +145,7 @@ const _displayNextItem = (
else _finishSearch(resultCount);
};
// Helper function used by query() to order search results.
-// Each input is an array of [docname, title, anchor, descr, score, filename].
+// Each input is an array of [docname, title, anchor, descr, score, filename, kind].
// Order the results by score (in opposite order of appearance, since the
// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically.
const _orderResultsByScoreThenName = (a, b) => {
@@ -248,6 +255,7 @@ const Search = {
searchSummary.classList.add("search-summary");
searchSummary.innerText = "";
const searchList = document.createElement("ul");
+ searchList.setAttribute("role", "list");
searchList.classList.add("search");
const out = document.getElementById("search-results");
@@ -318,7 +326,7 @@ const Search = {
const indexEntries = Search._index.indexentries;
// Collect multiple result groups to be sorted separately and then ordered.
- // Each is an array of [docname, title, anchor, descr, score, filename].
+ // Each is an array of [docname, title, anchor, descr, score, filename, kind].
const normalResults = [];
const nonMainIndexResults = [];
@@ -337,6 +345,7 @@ const Search = {
null,
score + boost,
filenames[file],
+ SearchResultKind.title,
]);
}
}
@@ -354,6 +363,7 @@ const Search = {
null,
score,
filenames[file],
+ SearchResultKind.index,
];
if (isMain) {
normalResults.push(result);
@@ -475,6 +485,7 @@ const Search = {
descr,
score,
filenames[match[0]],
+ SearchResultKind.object,
]);
};
Object.keys(objects).forEach((prefix) =>
@@ -585,6 +596,7 @@ const Search = {
null,
score,
filenames[file],
+ SearchResultKind.text,
]);
}
return results;
diff --git a/api/index.html b/api/index.html
index 2f37ced..d71a6d9 100644
--- a/api/index.html
+++ b/api/index.html
@@ -8,7 +8,7 @@
- API Documentation — SEAMM Loop Plug-in 2024.8.23 documentation
+ API Documentation — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/api/loop_step.html b/api/loop_step.html
index 047ac5a..bf277d5 100644
--- a/api/loop_step.html
+++ b/api/loop_step.html
@@ -8,7 +8,7 @@
- loop_step package — SEAMM Loop Plug-in 2024.8.23 documentation
+ loop_step package — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/api/modules.html b/api/modules.html
index fd44967..574f5c3 100644
--- a/api/modules.html
+++ b/api/modules.html
@@ -8,7 +8,7 @@
- loop_step — SEAMM Loop Plug-in 2024.8.23 documentation
+ loop_step — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/authors.html b/authors.html
index eecd94e..0484b43 100644
--- a/authors.html
+++ b/authors.html
@@ -8,7 +8,7 @@
- Development Team — SEAMM Loop Plug-in 2024.8.23 documentation
+ Development Team — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/developer_guide/contributing.html b/developer_guide/contributing.html
index 2b0e0d8..4341695 100644
--- a/developer_guide/contributing.html
+++ b/developer_guide/contributing.html
@@ -8,7 +8,7 @@
- Contributing — SEAMM Loop Plug-in 2024.8.23 documentation
+ Contributing — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/developer_guide/index.html b/developer_guide/index.html
index 31e52b9..3c97a7c 100644
--- a/developer_guide/index.html
+++ b/developer_guide/index.html
@@ -8,7 +8,7 @@
- Developer Documentation — SEAMM Loop Plug-in 2024.8.23 documentation
+ Developer Documentation — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/developer_guide/installation.html b/developer_guide/installation.html
index 1e38ffb..a5bd8e2 100644
--- a/developer_guide/installation.html
+++ b/developer_guide/installation.html
@@ -8,7 +8,7 @@
- Installation — SEAMM Loop Plug-in 2024.8.23 documentation
+ Installation — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/developer_guide/readme.html b/developer_guide/readme.html
index dbb4954..b4b31c5 100644
--- a/developer_guide/readme.html
+++ b/developer_guide/readme.html
@@ -8,7 +8,7 @@
- SEAMM Loop Plug-in — SEAMM Loop Plug-in 2024.8.23 documentation
+ SEAMM Loop Plug-in — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/developer_guide/usage.html b/developer_guide/usage.html
index b18378f..67eed6e 100644
--- a/developer_guide/usage.html
+++ b/developer_guide/usage.html
@@ -8,7 +8,7 @@
- Usage — SEAMM Loop Plug-in 2024.8.23 documentation
+ Usage — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/genindex.html b/genindex.html
index ded9bbf..9cdbb36 100644
--- a/genindex.html
+++ b/genindex.html
@@ -7,7 +7,7 @@
- Index — SEAMM Loop Plug-in 2024.8.23 documentation
+ Index — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -45,8 +45,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/getting_started/index.html b/getting_started/index.html
index 0e26aea..9e4a849 100644
--- a/getting_started/index.html
+++ b/getting_started/index.html
@@ -8,7 +8,7 @@
- Getting Started — SEAMM Loop Plug-in 2024.8.23 documentation
+ Getting Started — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/history.html b/history.html
index f132aad..4b4ac7a 100644
--- a/history.html
+++ b/history.html
@@ -8,7 +8,7 @@
- History — SEAMM Loop Plug-in 2024.8.23 documentation
+ History — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
@@ -499,6 +499,11 @@
History
+- 2024.10.15: Bugfix: incorrectly wrapping text description of substeps
-
+
- 2024.8.23 – Enhancement to ‘For’ loops
For integer loops, ensure that the loop variable is an integer and
make the directory name be value of the loop variable to make it easier
diff --git a/index.html b/index.html
index 84320d9..27c4deb 100644
--- a/index.html
+++ b/index.html
@@ -8,7 +8,7 @@
-
Loop Step — SEAMM Loop Plug-in 2024.8.23 documentation
+ Loop Step — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/objects.inv b/objects.inv
index 6aea540..03e52ad 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/py-modindex.html b/py-modindex.html
index e0ce36a..884ba3e 100644
--- a/py-modindex.html
+++ b/py-modindex.html
@@ -7,7 +7,7 @@
- Python Module Index — SEAMM Loop Plug-in 2024.8.23 documentation
+ Python Module Index — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -45,8 +45,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/search.html b/search.html
index 397824a..3fd3592 100644
--- a/search.html
+++ b/search.html
@@ -6,7 +6,7 @@
- Search - SEAMM Loop Plug-in 2024.8.23 documentation
+ Search - SEAMM Loop Plug-in 2024.10.15 documentation
@@ -44,8 +44,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+
diff --git a/searchindex.js b/searchindex.js
index d5086d0..49f217e 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"0.1.0 (2019-01-13)": [[10, "id4"]], "0.2.0 (2019-07-29)": [[10, "id3"]], "0.6 (8 September 2019)": [[10, "september-2019"]], "0.7.0 (17 December 2019)": [[10, "december-2019"]], "0.9 (15 April 2020)": [[10, "april-2020"]], "2020.10.1 (1 October 2020)": [[10, "october-2020"]], "2020.11.2 (2 November 2020)": [[10, "november-2020"]], "2020.12.4 (4 December 2020)": [[10, "december-2020"]], "2020.7.0 (23 July 2020)": [[10, "july-2020"]], "2020.8.3 (3 August 2020)": [[10, "august-2020"]], "2020.9.25 (25 September 2020)": [[10, "id2"]], "2020.9.25.1 (25 September 2020)": [[10, "september-2020"]], "2021.2.11 (11 February 2021)": [[10, "february-2021"]], "2021.2.4 (4 February 2021)": [[10, "id1"]], "API Documentation": [[0, null]], "Acknowledgements": [[7, "acknowledgements"]], "Contributing": [[4, null]], "Developer Documentation": [[5, null]], "Development Team": [[3, null]], "Features": [[7, "features"]], "Fix Bugs": [[4, "fix-bugs"]], "From sources": [[6, "from-sources"]], "Get Started!": [[4, "get-started"]], "Getting Started": [[9, null]], "History": [[10, null]], "Implement Features": [[4, "implement-features"]], "Index": [[12, "index"]], "Indices and tables": [[0, "indices-and-tables"], [5, "indices-and-tables"]], "Installation": [[6, null], [9, "installation"]], "Loop Step": [[11, null]], "Module contents": [[1, "module-loop_step"]], "More Information": [[11, "more-information"]], "Pull Request Guidelines": [[4, "pull-request-guidelines"]], "Replace this!": [[9, "replace-this"]], "Report Bugs": [[4, "report-bugs"]], "SEAMM Loop Plug-in": [[7, null]], "Stable release": [[6, "stable-release"]], "Submit Feedback": [[4, "submit-feedback"]], "Submodules": [[1, "submodules"]], "Tips": [[4, "tips"]], "Types of Contributions": [[4, "types-of-contributions"]], "Usage": [[8, null]], "User Guide": [[12, null]], "Write Documentation": [[4, "write-documentation"]], "loop_step": [[2, null]], "loop_step package": [[1, null]], "loop_step.loop module": [[1, "module-loop_step.loop"]], "loop_step.loop_parameters module": [[1, "module-loop_step.loop_parameters"]], "loop_step.loop_step module": [[1, "module-loop_step.loop_step"]], "loop_step.tk_loop module": [[1, "module-loop_step.tk_loop"]]}, "docnames": ["api/index", "api/loop_step", "api/modules", "authors", "developer_guide/contributing", "developer_guide/index", "developer_guide/installation", "developer_guide/readme", "developer_guide/usage", "getting_started/index", "history", "index", "user_guide/index"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1}, "filenames": ["api/index.rst", "api/loop_step.rst", "api/modules.rst", "authors.rst", "developer_guide/contributing.rst", "developer_guide/index.rst", "developer_guide/installation.rst", "developer_guide/readme.rst", "developer_guide/usage.rst", "getting_started/index.rst", "history.rst", "index.rst", "user_guide/index.rst"], "indexentries": {"create_dialog() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.create_dialog", false]], "create_node() (loop_step.loop_step.loopstep method)": [[1, "loop_step.loop_step.LoopStep.create_node", false]], "create_parser() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.create_parser", false]], "create_tk_node() (loop_step.loop_step.loopstep method)": [[1, "loop_step.loop_step.LoopStep.create_tk_node", false]], "criteria_callback() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.criteria_callback", false]], "default_edge_subtype() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.default_edge_subtype", false]], "default_edge_subtype() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.default_edge_subtype", false]], "describe() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.describe", false]], "description() (loop_step.loop_step.loopstep method)": [[1, "loop_step.loop_step.LoopStep.description", false]], "description_text() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.description_text", false]], "exit_node() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.exit_node", false]], "git_revision (loop_step.loop.loop property)": [[1, "loop_step.loop.Loop.git_revision", false]], "iter_format (loop_step.loop.loop property)": [[1, "loop_step.loop.Loop.iter_format", false]], "loop (class in loop_step.loop)": [[1, "loop_step.loop.Loop", false]], "loop_node() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.loop_node", false]], "loop_step": [[1, "module-loop_step", false]], "loop_step.loop": [[1, "module-loop_step.loop", false]], "loop_step.loop_parameters": [[1, "module-loop_step.loop_parameters", false]], "loop_step.loop_step": [[1, "module-loop_step.loop_step", false]], "loop_step.tk_loop": [[1, "module-loop_step.tk_loop", false]], "loopparameters (class in loop_step.loop_parameters)": [[1, "loop_step.loop_parameters.LoopParameters", false]], "loopstep (class in loop_step.loop_step)": [[1, "loop_step.loop_step.LoopStep", false]], "module": [[1, "module-loop_step", false], [1, "module-loop_step.loop", false], [1, "module-loop_step.loop_parameters", false], [1, "module-loop_step.loop_step", false], [1, "module-loop_step.tk_loop", false]], "my_description (loop_step.loop_step.loopstep attribute)": [[1, "loop_step.loop_step.LoopStep.my_description", false]], "next_anchor() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.next_anchor", false]], "node_class (loop_step.tk_loop.tkloop attribute)": [[1, "loop_step.tk_loop.TkLoop.node_class", false]], "parameters (loop_step.loop_parameters.loopparameters attribute)": [[1, "loop_step.loop_parameters.LoopParameters.parameters", false]], "reset_dialog() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.reset_dialog", false]], "right_click() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.right_click", false]], "run() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.run", false]], "safe_filename() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.safe_filename", false]], "set_id() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.set_id", false]], "set_subids() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.set_subids", false]], "tkloop (class in loop_step.tk_loop)": [[1, "loop_step.tk_loop.TkLoop", false]], "version (loop_step.loop.loop property)": [[1, "loop_step.loop.Loop.version", false]], "working_path (loop_step.loop.loop property)": [[1, "loop_step.loop.Loop.working_path", false]], "write_final_structure() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.write_final_structure", false]]}, "objects": {"": [[1, 0, 0, "-", "loop_step"]], "loop_step": [[1, 0, 0, "-", "loop"], [1, 0, 0, "-", "loop_parameters"], [1, 0, 0, "-", "loop_step"], [1, 0, 0, "-", "tk_loop"]], "loop_step.loop": [[1, 1, 1, "", "Loop"]], "loop_step.loop.Loop": [[1, 2, 1, "", "create_parser"], [1, 2, 1, "", "default_edge_subtype"], [1, 2, 1, "", "describe"], [1, 2, 1, "", "description_text"], [1, 2, 1, "", "exit_node"], [1, 3, 1, "", "git_revision"], [1, 3, 1, "", "iter_format"], [1, 2, 1, "", "loop_node"], [1, 2, 1, "", "run"], [1, 2, 1, "", "safe_filename"], [1, 2, 1, "", "set_id"], [1, 2, 1, "", "set_subids"], [1, 3, 1, "", "version"], [1, 3, 1, "", "working_path"], [1, 2, 1, "", "write_final_structure"]], "loop_step.loop_parameters": [[1, 1, 1, "", "LoopParameters"]], "loop_step.loop_parameters.LoopParameters": [[1, 4, 1, "", "parameters"]], "loop_step.loop_step": [[1, 1, 1, "", "LoopStep"]], "loop_step.loop_step.LoopStep": [[1, 2, 1, "", "create_node"], [1, 2, 1, "", "create_tk_node"], [1, 2, 1, "", "description"], [1, 4, 1, "", "my_description"]], "loop_step.tk_loop": [[1, 1, 1, "", "TkLoop"]], "loop_step.tk_loop.TkLoop": [[1, 2, 1, "", "create_dialog"], [1, 2, 1, "", "criteria_callback"], [1, 2, 1, "", "default_edge_subtype"], [1, 2, 1, "", "next_anchor"], [1, 4, 1, "", "node_class"], [1, 2, 1, "", "reset_dialog"], [1, 2, 1, "", "right_click"]]}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "property", "Python property"], "4": ["py", "attribute", "Python attribute"]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:property", "4": "py:attribute"}, "terms": {"": [1, 4], "1": [1, 11], "10": 1, "120": 1, "1547580": 7, "16": 10, "2": [4, 11], "20": 1, "200": 1, "2022": 10, "2023": 10, "2024": 10, "21": 10, "2136142": 7, "24": 10, "28": 10, "3": 4, "30": 10, "4": 4, "5": 4, "50": 1, "6": 4, "7": 4, "A": [1, 7, 11], "FOR": 11, "For": [1, 7, 9, 10], "If": [1, 4, 6, 9], "In": 9, "On": 1, "Or": 6, "That": 9, "The": [1, 4, 6, 9, 10, 11, 12], "There": 10, "To": [4, 6, 8, 11], "abil": 10, "about": [1, 4, 9], "accord": 1, "action": 10, "ad": [10, 11], "add": [1, 4, 10], "after": [1, 10], "aid": 10, "alia": 1, "all": [1, 4, 10], "allow": 1, "alreadi": [9, 10], "also": 9, "alwai": [4, 6], "an": [1, 4, 9, 10], "anchor": 1, "ani": [1, 4, 10], "anyth": [1, 4], "api": 11, "appreci": 4, "appropri": [1, 9], "ar": [4, 10], "argument": [1, 10], "articl": 4, "assum": 4, "award": 7, "b": 4, "base": 1, "becom": 3, "been": 10, "befor": [4, 10], "below": 1, "best": 4, "better": 10, "bit": 4, "blank": 10, "block": 10, "blog": 4, "bodi": [1, 10], "both": 9, "box": 9, "branch": [4, 10], "bsd": 7, "bug": [10, 11], "bugfix": [4, 10], "callback": 1, "can": [4, 6, 9, 10], "canva": 1, "caught": 10, "caus": [1, 10], "cd": 4, "chang": [1, 4, 10], "che": 7, "check": [4, 9, 10], "checkout": 4, "ci": [4, 10], "class": [1, 10], "clean": 10, "clear": 1, "click": 9, "clone": [4, 6], "code": [7, 10, 11], "column": 1, "com": [4, 6], "command": [1, 6, 10], "commandlin": 10, "commit": 4, "compat": 10, "complet": 11, "compon": 9, "conda": 9, "config": 1, "configur": [1, 10], "consist": 10, "consolid": 10, "contain": 1, "content": [0, 2, 5], "continu": 1, "contribut": [5, 11], "contributor": 3, "control": [1, 7, 11], "cookiecutt": 7, "copi": [4, 6], "correct": 10, "could": [4, 10], "count": 10, "crash": 10, "creat": [1, 4, 7, 10], "create_dialog": [1, 2], "create_nod": [1, 2], "create_pars": [1, 2], "create_tk_nod": [1, 2], "credit": 4, "criteria": 1, "criteria_callback": [1, 2], "criterion": 1, "curl": 6, "current": 1, "dashboard": 10, "data": 1, "databas": [1, 10], "date": 9, "debug": 10, "default": 1, "default_edge_subtyp": [1, 2], "default_unit": 1, "delimit": 10, "depend": 10, "describ": [1, 2], "descript": [1, 2, 4, 10], "description_text": [1, 2], "detail": [4, 9], "develop": [4, 7, 11], "dialog": 1, "dict": 1, "dictionari": 1, "differ": 10, "direct": [9, 10], "directori": [1, 10], "do": [1, 11], "doc": 4, "docstr": 4, "document": [7, 10], "doe": 1, "don": [3, 6], "done": 4, "download": 6, "driven": 4, "each": 10, "easier": [4, 10], "easiest": 9, "edg": 1, "edit": 1, "either": 6, "element": 7, "eman": 1, "embed": 10, "empti": 1, "end": [1, 10], "enhanc": [4, 10], "enough": 9, "ensur": [9, 10], "enumer": 1, "environ": 9, "error": [1, 10], "etc": 11, "even": 4, "event": 1, "everi": 4, "exampl": [1, 9], "exce": 1, "exist": 10, "exit": 1, "exit_nod": [1, 2], "explain": 4, "extens": 1, "factori": 1, "fail": 10, "field": 1, "file": [1, 4, 10], "filenam": 1, "filter": 1, "final": 1, "final_structur": 10, "find": 10, "first": [1, 10], "fix": [10, 11], "flake8": 4, "float": 1, "flowchart": [1, 7], "follow": 9, "foreach": [1, 7, 10], "fork": 4, "format": 1, "format_str": 1, "foundat": 7, "free": 7, "from": [1, 5, 7, 10], "function": [4, 9, 11], "fund": 7, "further": 10, "gap": 1, "gener": 10, "get": [5, 10, 11], "git": [1, 4, 6], "git_revis": [1, 2], "github": [4, 6, 7, 10], "give": 10, "given": 4, "graphic": [1, 9], "greatli": 4, "grid": 11, "group": 1, "gui": 1, "guid": [6, 9, 11], "guidelin": 5, "h": 1, "had": 10, "handl": [1, 10], "have": [4, 6, 10], "help": 4, "help_text": 1, "helper": 1, "here": [4, 9], "histori": 11, "how": [1, 4], "html": 7, "http": [4, 6, 7], "i": [1, 4, 6, 7, 9, 10], "id": 1, "ignor": 10, "import": 8, "improv": 10, "includ": 4, "inclus": 1, "increment": 1, "index": [0, 5, 7, 10], "indic": 1, "inform": [1, 10], "instal": [4, 5, 10], "institut": 7, "integ": 10, "integr": 1, "interest": 10, "interfac": 1, "intern": 10, "introduct": 11, "io": 7, "issu": 4, "item": [1, 11], "item_nnn": 10, "iter": [1, 10], "iter_format": [1, 2], "job": [1, 10], "join": 3, "just": 4, "keep": 4, "keyword": [1, 10], "kind": 1, "kwarg": 1, "lai": 1, "languag": 7, "last": 1, "lead": 3, "leav": 1, "licens": 7, "like": [7, 10, 11], "line": [1, 10], "linux": 10, "list": [1, 4, 7, 10, 11], "littl": 4, "local": 4, "logger": 1, "look": 4, "loop": [2, 4, 6, 8, 9, 10], "loop_nod": [1, 2], "loop_paramet": 2, "loop_step": [0, 4, 6, 7, 8], "loopparamet": [1, 2], "loopstep": [1, 2], "m": 4, "made": 10, "mai": 1, "main": 10, "make": [4, 10], "mani": [1, 4], "master": 6, "match": [1, 10], "meet": 4, "method": [1, 6], "might": 4, "miss": 10, "mkvirtualenv": 4, "mmcif": 10, "modul": [0, 2, 5], "molecular": 7, "molssi": [3, 6, 7, 10], "molsystem": 10, "more": [1, 4, 9, 10], "most": 6, "move": 10, "much": 10, "my_descript": [1, 2], "my_logg": 1, "name": [1, 4, 10], "narrow": 4, "nation": 7, "need": 1, "nest": 10, "new": [1, 4, 10], "next": [1, 9], "next_anchor": [1, 2], "nice": 1, "node": 1, "node_class": [1, 2], "node_id": 1, "non": [1, 9], "none": 1, "normal": 10, "now": [4, 10], "number": [1, 10, 11], "oac": 7, "object": 1, "offici": 4, "ol": 6, "onc": 6, "one": 9, "op": 1, "open": 4, "oper": [1, 4, 10], "option": 10, "org": [3, 4], "origin": 4, "other": 4, "our": 1, "out": [1, 10], "output": 10, "over": [1, 7, 10, 11], "p": 1, "packag": [0, 2, 7], "page": [0, 5, 10], "paramet": [1, 2], "pars": 10, "parser": 1, "part": [1, 4], "partner": 1, "pass": 4, "paul": 3, "paulsax": 4, "period": 10, "pip": [4, 6], "pleas": 4, "plot": 10, "plug": [6, 8, 9, 12], "plugin": 7, "point": 1, "posit": 1, "possibl": 4, "post": 4, "prefer": 6, "prepar": 10, "print": 10, "probabl": [1, 9], "problem": 10, "process": [6, 10], "program": 7, "project": [4, 7, 8], "properli": 10, "properti": 1, "propos": 4, "provid": [1, 7, 11], "psax": 3, "public": 6, "pull": 5, "pull_request": 4, "push": 4, "put": [4, 9], "py": [4, 6, 10], "pypi": [4, 10], "python": [4, 6, 10], "pyup": 10, "queri": [1, 10], "quot": 10, "rang": 11, "re": 4, "readi": 4, "readm": [4, 10], "readthedoc": 10, "real": 1, "receiv": 7, "recent": 6, "refer": 11, "regexp": [1, 10], "releas": [5, 10], "rememb": 4, "remov": [1, 10], "reorgan": 10, "repo": [4, 6], "repositori": 6, "reproduc": 4, "request": 5, "requir": 10, "rerun": 10, "reset_dialog": [1, 2], "restart": 10, "return": 1, "right_click": [1, 2], "row": [1, 7, 10, 11], "rst": 4, "run": [1, 2, 4, 6], "safe_filenam": [1, 2], "sax": 3, "scienc": 7, "scope": 4, "seamm": [1, 6, 9, 10], "search": [0, 1, 5], "searchabl": 10, "second": [1, 9], "see": [7, 9], "select": [1, 9, 10], "self": 1, "semant": 1, "send": 4, "sequenti": 1, "set": [1, 4], "set_id": [1, 2], "set_subid": [1, 2], "setup": [1, 4, 6, 10], "short": [1, 10], "shortcut": 9, "should": [1, 4, 9], "simpl": [7, 11], "simpli": 9, "so": 10, "softwar": 7, "sometim": 10, "sourc": [1, 5], "stabl": 5, "standard": 10, "start": [1, 5, 10, 11], "stderr": 10, "step": [1, 4, 9], "stevedor": 1, "stop": 1, "str": 1, "straightforward": 9, "string": 1, "structur": [1, 7, 10, 11], "subdirectori": 10, "submodul": 2, "subnod": 1, "subset": 4, "subtyp": 1, "support": [4, 10], "sure": 4, "sw": 1, "switch": [9, 10], "system": [1, 4, 10], "t": [3, 6], "tab": 9, "tabl": [1, 7, 10, 11], "table1": 1, "tag": 4, "tarbal": 6, "team": 11, "templat": 7, "termin": 6, "test": [1, 4], "test_loop_step": 4, "thei": 4, "them": [1, 4], "theme": 10, "thi": [1, 4, 6, 7, 11], "through": [4, 6], "tip": 5, "tk": 1, "tk_flowchart": 1, "tk_loop": 2, "tkloop": [1, 2], "tknode": 1, "too": 1, "tox": 4, "traceback": 10, "travi": 4, "travisci": 10, "troubleshoot": 4, "two": [1, 9], "two_valu": 1, "type": [1, 5, 9], "under": 7, "up": [4, 9, 10], "updat": [4, 9, 10], "us": [1, 4, 8, 9, 10, 11], "usag": 5, "user": [9, 10, 11], "usual": 1, "valu": [1, 10], "variabl": [1, 10], "version": [1, 2, 4, 10], "view": 10, "virtualenv": 4, "virtualenvwrapp": 4, "volunt": 4, "w": 1, "wa": [7, 10], "wai": [4, 10], "want": 4, "warn": 1, "web": 4, "websit": 4, "welcom": 4, "well": 10, "what": 1, "when": [4, 10], "where": [1, 10], "whether": 4, "which": [1, 7], "whoever": 4, "why": 3, "widget": 1, "wish": 9, "work": [4, 10], "working_path": [1, 2], "would": 4, "write": [1, 10], "write_final_structur": [1, 2], "wrote": 10, "x": 1, "xxxx": 12, "y": 1, "you": [3, 4, 6, 9], "your": [4, 6, 9], "your_name_her": 4}, "titles": ["API Documentation", "loop_step package", "loop_step", "Development Team", "Contributing", "Developer Documentation", "Installation", "SEAMM Loop Plug-in", "Usage", "Getting Started", "History", "Loop Step", "User Guide"], "titleterms": {"0": 10, "01": 10, "07": 10, "1": 10, "10": 10, "11": 10, "12": 10, "13": 10, "15": 10, "17": 10, "2": 10, "2019": 10, "2020": 10, "2021": 10, "23": 10, "25": 10, "29": 10, "3": 10, "4": 10, "6": 10, "7": 10, "8": 10, "9": 10, "acknowledg": 7, "api": 0, "april": 10, "august": 10, "bug": 4, "content": 1, "contribut": 4, "decemb": 10, "develop": [3, 5], "document": [0, 4, 5], "featur": [4, 7], "februari": 10, "feedback": 4, "fix": 4, "from": 6, "get": [4, 9], "guid": 12, "guidelin": 4, "histori": 10, "implement": 4, "index": 12, "indic": [0, 5], "inform": 11, "instal": [6, 9], "juli": 10, "loop": [1, 7, 11], "loop_paramet": 1, "loop_step": [1, 2], "modul": 1, "more": 11, "novemb": 10, "octob": 10, "packag": 1, "plug": 7, "pull": 4, "releas": 6, "replac": 9, "report": 4, "request": 4, "seamm": 7, "septemb": 10, "sourc": 6, "stabl": 6, "start": [4, 9], "step": 11, "submit": 4, "submodul": 1, "tabl": [0, 5], "team": 3, "thi": 9, "tip": 4, "tk_loop": 1, "type": 4, "usag": 8, "user": 12, "write": 4}})
\ No newline at end of file
+Search.setIndex({"alltitles": {"0.1.0 (2019-01-13)": [[10, "id4"]], "0.2.0 (2019-07-29)": [[10, "id3"]], "0.6 (8 September 2019)": [[10, "september-2019"]], "0.7.0 (17 December 2019)": [[10, "december-2019"]], "0.9 (15 April 2020)": [[10, "april-2020"]], "2020.10.1 (1 October 2020)": [[10, "october-2020"]], "2020.11.2 (2 November 2020)": [[10, "november-2020"]], "2020.12.4 (4 December 2020)": [[10, "december-2020"]], "2020.7.0 (23 July 2020)": [[10, "july-2020"]], "2020.8.3 (3 August 2020)": [[10, "august-2020"]], "2020.9.25 (25 September 2020)": [[10, "id2"]], "2020.9.25.1 (25 September 2020)": [[10, "september-2020"]], "2021.2.11 (11 February 2021)": [[10, "february-2021"]], "2021.2.4 (4 February 2021)": [[10, "id1"]], "API Documentation": [[0, null]], "Acknowledgements": [[7, "acknowledgements"]], "Contributing": [[4, null]], "Developer Documentation": [[5, null]], "Development Team": [[3, null]], "Features": [[7, "features"]], "Fix Bugs": [[4, "fix-bugs"]], "From sources": [[6, "from-sources"]], "Get Started!": [[4, "get-started"]], "Getting Started": [[9, null]], "History": [[10, null]], "Implement Features": [[4, "implement-features"]], "Index": [[12, "index"]], "Indices and tables": [[0, "indices-and-tables"], [5, "indices-and-tables"]], "Installation": [[6, null], [9, "installation"]], "Loop Step": [[11, null]], "Module contents": [[1, "module-loop_step"]], "More Information": [[11, "more-information"]], "Pull Request Guidelines": [[4, "pull-request-guidelines"]], "Replace this!": [[9, "replace-this"]], "Report Bugs": [[4, "report-bugs"]], "SEAMM Loop Plug-in": [[7, null]], "Stable release": [[6, "stable-release"]], "Submit Feedback": [[4, "submit-feedback"]], "Submodules": [[1, "submodules"]], "Tips": [[4, "tips"]], "Types of Contributions": [[4, "types-of-contributions"]], "Usage": [[8, null]], "User Guide": [[12, null]], "Write Documentation": [[4, "write-documentation"]], "loop_step": [[2, null]], "loop_step package": [[1, null]], "loop_step.loop module": [[1, "module-loop_step.loop"]], "loop_step.loop_parameters module": [[1, "module-loop_step.loop_parameters"]], "loop_step.loop_step module": [[1, "module-loop_step.loop_step"]], "loop_step.tk_loop module": [[1, "module-loop_step.tk_loop"]]}, "docnames": ["api/index", "api/loop_step", "api/modules", "authors", "developer_guide/contributing", "developer_guide/index", "developer_guide/installation", "developer_guide/readme", "developer_guide/usage", "getting_started/index", "history", "index", "user_guide/index"], "envversion": {"sphinx": 64, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.todo": 2, "sphinx.ext.viewcode": 1}, "filenames": ["api/index.rst", "api/loop_step.rst", "api/modules.rst", "authors.rst", "developer_guide/contributing.rst", "developer_guide/index.rst", "developer_guide/installation.rst", "developer_guide/readme.rst", "developer_guide/usage.rst", "getting_started/index.rst", "history.rst", "index.rst", "user_guide/index.rst"], "indexentries": {"create_dialog() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.create_dialog", false]], "create_node() (loop_step.loop_step.loopstep method)": [[1, "loop_step.loop_step.LoopStep.create_node", false]], "create_parser() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.create_parser", false]], "create_tk_node() (loop_step.loop_step.loopstep method)": [[1, "loop_step.loop_step.LoopStep.create_tk_node", false]], "criteria_callback() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.criteria_callback", false]], "default_edge_subtype() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.default_edge_subtype", false]], "default_edge_subtype() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.default_edge_subtype", false]], "describe() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.describe", false]], "description() (loop_step.loop_step.loopstep method)": [[1, "loop_step.loop_step.LoopStep.description", false]], "description_text() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.description_text", false]], "exit_node() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.exit_node", false]], "git_revision (loop_step.loop.loop property)": [[1, "loop_step.loop.Loop.git_revision", false]], "iter_format (loop_step.loop.loop property)": [[1, "loop_step.loop.Loop.iter_format", false]], "loop (class in loop_step.loop)": [[1, "loop_step.loop.Loop", false]], "loop_node() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.loop_node", false]], "loop_step": [[1, "module-loop_step", false]], "loop_step.loop": [[1, "module-loop_step.loop", false]], "loop_step.loop_parameters": [[1, "module-loop_step.loop_parameters", false]], "loop_step.loop_step": [[1, "module-loop_step.loop_step", false]], "loop_step.tk_loop": [[1, "module-loop_step.tk_loop", false]], "loopparameters (class in loop_step.loop_parameters)": [[1, "loop_step.loop_parameters.LoopParameters", false]], "loopstep (class in loop_step.loop_step)": [[1, "loop_step.loop_step.LoopStep", false]], "module": [[1, "module-loop_step", false], [1, "module-loop_step.loop", false], [1, "module-loop_step.loop_parameters", false], [1, "module-loop_step.loop_step", false], [1, "module-loop_step.tk_loop", false]], "my_description (loop_step.loop_step.loopstep attribute)": [[1, "loop_step.loop_step.LoopStep.my_description", false]], "next_anchor() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.next_anchor", false]], "node_class (loop_step.tk_loop.tkloop attribute)": [[1, "loop_step.tk_loop.TkLoop.node_class", false]], "parameters (loop_step.loop_parameters.loopparameters attribute)": [[1, "loop_step.loop_parameters.LoopParameters.parameters", false]], "reset_dialog() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.reset_dialog", false]], "right_click() (loop_step.tk_loop.tkloop method)": [[1, "loop_step.tk_loop.TkLoop.right_click", false]], "run() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.run", false]], "safe_filename() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.safe_filename", false]], "set_id() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.set_id", false]], "set_subids() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.set_subids", false]], "tkloop (class in loop_step.tk_loop)": [[1, "loop_step.tk_loop.TkLoop", false]], "version (loop_step.loop.loop property)": [[1, "loop_step.loop.Loop.version", false]], "working_path (loop_step.loop.loop property)": [[1, "loop_step.loop.Loop.working_path", false]], "write_final_structure() (loop_step.loop.loop method)": [[1, "loop_step.loop.Loop.write_final_structure", false]]}, "objects": {"": [[1, 0, 0, "-", "loop_step"]], "loop_step": [[1, 0, 0, "-", "loop"], [1, 0, 0, "-", "loop_parameters"], [1, 0, 0, "-", "loop_step"], [1, 0, 0, "-", "tk_loop"]], "loop_step.loop": [[1, 1, 1, "", "Loop"]], "loop_step.loop.Loop": [[1, 2, 1, "", "create_parser"], [1, 2, 1, "", "default_edge_subtype"], [1, 2, 1, "", "describe"], [1, 2, 1, "", "description_text"], [1, 2, 1, "", "exit_node"], [1, 3, 1, "", "git_revision"], [1, 3, 1, "", "iter_format"], [1, 2, 1, "", "loop_node"], [1, 2, 1, "", "run"], [1, 2, 1, "", "safe_filename"], [1, 2, 1, "", "set_id"], [1, 2, 1, "", "set_subids"], [1, 3, 1, "", "version"], [1, 3, 1, "", "working_path"], [1, 2, 1, "", "write_final_structure"]], "loop_step.loop_parameters": [[1, 1, 1, "", "LoopParameters"]], "loop_step.loop_parameters.LoopParameters": [[1, 4, 1, "", "parameters"]], "loop_step.loop_step": [[1, 1, 1, "", "LoopStep"]], "loop_step.loop_step.LoopStep": [[1, 2, 1, "", "create_node"], [1, 2, 1, "", "create_tk_node"], [1, 2, 1, "", "description"], [1, 4, 1, "", "my_description"]], "loop_step.tk_loop": [[1, 1, 1, "", "TkLoop"]], "loop_step.tk_loop.TkLoop": [[1, 2, 1, "", "create_dialog"], [1, 2, 1, "", "criteria_callback"], [1, 2, 1, "", "default_edge_subtype"], [1, 2, 1, "", "next_anchor"], [1, 4, 1, "", "node_class"], [1, 2, 1, "", "reset_dialog"], [1, 2, 1, "", "right_click"]]}, "objnames": {"0": ["py", "module", "Python module"], "1": ["py", "class", "Python class"], "2": ["py", "method", "Python method"], "3": ["py", "property", "Python property"], "4": ["py", "attribute", "Python attribute"]}, "objtypes": {"0": "py:module", "1": "py:class", "2": "py:method", "3": "py:property", "4": "py:attribute"}, "terms": {"": [1, 4], "1": [1, 11], "10": 1, "120": 1, "1547580": 7, "16": 10, "2": [4, 11], "20": 1, "200": 1, "2022": 10, "2023": 10, "2024": 10, "21": 10, "2136142": 7, "24": 10, "28": 10, "3": 4, "30": 10, "4": 4, "5": 4, "50": 1, "6": 4, "7": 4, "A": [1, 7, 11], "FOR": 11, "For": [1, 7, 9, 10], "If": [1, 4, 6, 9], "In": 9, "On": 1, "Or": 6, "That": 9, "The": [1, 4, 6, 9, 10, 11, 12], "There": 10, "To": [4, 6, 8, 11], "abil": 10, "about": [1, 4, 9], "accord": 1, "action": 10, "ad": [10, 11], "add": [1, 4, 10], "after": [1, 10], "aid": 10, "alia": 1, "all": [1, 4, 10], "allow": 1, "alreadi": [9, 10], "also": 9, "alwai": [4, 6], "an": [1, 4, 9, 10], "anchor": 1, "ani": [1, 4, 10], "anyth": [1, 4], "api": 11, "appreci": 4, "appropri": [1, 9], "ar": [4, 10], "argument": [1, 10], "articl": 4, "assum": 4, "award": 7, "b": 4, "base": 1, "becom": 3, "been": 10, "befor": [4, 10], "below": 1, "best": 4, "better": 10, "bit": 4, "blank": 10, "block": 10, "blog": 4, "bodi": [1, 10], "both": 9, "box": 9, "branch": [4, 10], "bsd": 7, "bug": [10, 11], "bugfix": [4, 10], "callback": 1, "can": [4, 6, 9, 10], "canva": 1, "caught": 10, "caus": [1, 10], "cd": 4, "chang": [1, 4, 10], "che": 7, "check": [4, 9, 10], "checkout": 4, "ci": [4, 10], "class": [1, 10], "clean": 10, "clear": 1, "click": 9, "clone": [4, 6], "code": [7, 10, 11], "column": 1, "com": [4, 6], "command": [1, 6, 10], "commandlin": 10, "commit": 4, "compat": 10, "complet": 11, "compon": 9, "conda": 9, "config": 1, "configur": [1, 10], "consist": 10, "consolid": 10, "contain": 1, "content": [0, 2, 5], "continu": 1, "contribut": [5, 11], "contributor": 3, "control": [1, 7, 11], "cookiecutt": 7, "copi": [4, 6], "correct": 10, "could": [4, 10], "count": 10, "crash": 10, "creat": [1, 4, 7, 10], "create_dialog": [1, 2], "create_nod": [1, 2], "create_pars": [1, 2], "create_tk_nod": [1, 2], "credit": 4, "criteria": 1, "criteria_callback": [1, 2], "criterion": 1, "curl": 6, "current": 1, "dashboard": 10, "data": 1, "databas": [1, 10], "date": 9, "debug": 10, "default": 1, "default_edge_subtyp": [1, 2], "default_unit": 1, "delimit": 10, "depend": 10, "describ": [1, 2], "descript": [1, 2, 4, 10], "description_text": [1, 2], "detail": [4, 9], "develop": [4, 7, 11], "dialog": 1, "dict": 1, "dictionari": 1, "differ": 10, "direct": [9, 10], "directori": [1, 10], "do": [1, 11], "doc": 4, "docstr": 4, "document": [7, 10], "doe": 1, "don": [3, 6], "done": 4, "download": 6, "driven": 4, "e": 10, "each": 10, "easier": [4, 10], "easiest": 9, "edg": 1, "edit": 1, "either": 6, "element": 7, "eman": 1, "embed": 10, "empti": 1, "end": [1, 10], "enhanc": [4, 10], "enough": 9, "ensur": [9, 10], "enumer": 1, "environ": 9, "error": [1, 10], "etc": 11, "even": 4, "event": 1, "everi": 4, "exampl": [1, 9], "exce": 1, "exist": 10, "exit": 1, "exit_nod": [1, 2], "explain": 4, "extens": 1, "factori": 1, "fail": 10, "field": 1, "file": [1, 4, 10], "filenam": 1, "filter": 1, "final": 1, "final_structur": 10, "find": 10, "first": [1, 10], "fix": [10, 11], "flake8": 4, "float": 1, "flowchart": [1, 7], "follow": 9, "foreach": [1, 7, 10], "fork": 4, "format": 1, "format_str": 1, "foundat": 7, "free": 7, "from": [1, 5, 7, 10], "function": [4, 9, 11], "fund": 7, "further": 10, "g": 10, "gap": 1, "gener": 10, "get": [5, 10, 11], "git": [1, 4, 6], "git_revis": [1, 2], "github": [4, 6, 7, 10], "give": 10, "given": 4, "graphic": [1, 9], "greatli": 4, "grid": 11, "group": 1, "gui": 1, "guid": [6, 9, 11], "guidelin": 5, "h": 1, "had": 10, "handl": [1, 10], "have": [4, 6, 10], "help": 4, "help_text": 1, "helper": 1, "here": [4, 9], "histori": 11, "how": [1, 4], "html": 7, "http": [4, 6, 7], "i": [1, 4, 6, 7, 9, 10], "id": 1, "ignor": 10, "import": 8, "improv": 10, "includ": 4, "inclus": 1, "incorrectli": 10, "increment": 1, "index": [0, 5, 7, 10], "indic": 1, "inform": [1, 10], "instal": [4, 5, 10], "institut": 7, "integ": 10, "integr": 1, "interest": 10, "interfac": 1, "intern": 10, "introduct": 11, "io": 7, "issu": [4, 10], "item": [1, 11], "item_nnn": 10, "iter": [1, 10], "iter_format": [1, 2], "job": [1, 10], "join": 3, "just": 4, "keep": 4, "keyword": [1, 10], "kind": 1, "kwarg": 1, "lai": 1, "languag": 7, "last": 1, "lead": 3, "leav": 1, "licens": 7, "like": [7, 10, 11], "line": [1, 10], "linux": 10, "list": [1, 4, 7, 10, 11], "littl": 4, "local": 4, "logger": 1, "look": 4, "loop": [2, 4, 6, 8, 9, 10], "loop_nod": [1, 2], "loop_paramet": 2, "loop_step": [0, 4, 6, 7, 8], "loopparamet": [1, 2], "loopstep": [1, 2], "m": 4, "made": 10, "mai": 1, "main": 10, "make": [4, 10], "mani": [1, 4], "master": 6, "match": [1, 10], "meet": 4, "method": [1, 6], "might": 4, "miss": 10, "mkvirtualenv": 4, "mmcif": 10, "modul": [0, 2, 5], "molecular": 7, "molssi": [3, 6, 7, 10], "molsystem": 10, "more": [1, 4, 9, 10], "most": 6, "move": 10, "much": 10, "my_descript": [1, 2], "my_logg": 1, "name": [1, 4, 10], "narrow": 4, "nation": 7, "need": 1, "nest": 10, "new": [1, 4, 10], "next": [1, 9], "next_anchor": [1, 2], "nice": 1, "node": 1, "node_class": [1, 2], "node_id": 1, "non": [1, 9], "none": 1, "normal": 10, "now": [4, 10], "number": [1, 10, 11], "oac": 7, "object": 1, "offici": 4, "ol": 6, "onc": 6, "one": 9, "op": 1, "open": 4, "oper": [1, 4, 10], "option": 10, "org": [3, 4], "origin": 4, "other": 4, "our": 1, "out": [1, 10], "output": 10, "over": [1, 7, 10, 11], "p": 1, "packag": [0, 2, 7], "page": [0, 5, 10], "paramet": [1, 2], "pars": 10, "parser": 1, "part": [1, 4], "partner": 1, "pass": 4, "paul": 3, "paulsax": 4, "period": 10, "pip": [4, 6], "pleas": 4, "plot": 10, "plug": [6, 8, 9, 12], "plugin": 7, "point": 1, "posit": 1, "possibl": 4, "post": 4, "prefer": 6, "prepar": 10, "print": 10, "probabl": [1, 9], "problem": 10, "process": [6, 10], "program": 7, "project": [4, 7, 8], "properli": 10, "properti": 1, "propos": 4, "provid": [1, 7, 11], "psax": 3, "public": 6, "pull": 5, "pull_request": 4, "push": 4, "put": [4, 9], "py": [4, 6, 10], "pypi": [4, 10], "python": [4, 6, 10], "pyup": 10, "queri": [1, 10], "quot": 10, "rang": 11, "re": 4, "readi": 4, "readm": [4, 10], "readthedoc": 10, "real": 1, "receiv": 7, "recent": 6, "refer": 11, "regexp": [1, 10], "releas": [5, 10], "rememb": 4, "remov": [1, 10], "reorgan": 10, "repo": [4, 6], "repositori": 6, "reproduc": 4, "request": 5, "requir": 10, "rerun": 10, "reset_dialog": [1, 2], "restart": 10, "return": 1, "right_click": [1, 2], "row": [1, 7, 10, 11], "rst": 4, "run": [1, 2, 4, 6], "safe_filenam": [1, 2], "sax": 3, "scienc": 7, "scope": 4, "seamm": [1, 6, 9, 10], "search": [0, 1, 5], "searchabl": 10, "second": [1, 9], "see": [7, 9], "select": [1, 9, 10], "self": 1, "semant": 1, "send": 4, "sequenti": 1, "set": [1, 4], "set_id": [1, 2], "set_subid": [1, 2], "setup": [1, 4, 6, 10], "short": [1, 10], "shortcut": 9, "should": [1, 4, 9], "simpl": [7, 11], "simpli": 9, "so": 10, "softwar": 7, "sometim": 10, "sourc": [1, 5], "stabl": 5, "standard": 10, "start": [1, 5, 10, 11], "stderr": 10, "step": [1, 4, 9], "stevedor": 1, "stop": 1, "str": 1, "straightforward": 9, "string": 1, "structur": [1, 7, 10, 11], "subdirectori": 10, "submodul": 2, "subnod": 1, "subset": 4, "substep": 10, "subtyp": 1, "support": [4, 10], "sure": 4, "sw": 1, "switch": [9, 10], "system": [1, 4, 10], "t": [3, 6], "tab": 9, "tabl": [1, 7, 10, 11], "table1": 1, "tag": 4, "tarbal": 6, "team": 11, "templat": 7, "termin": 6, "test": [1, 4], "test_loop_step": 4, "text": 10, "thei": 4, "them": [1, 4], "theme": 10, "thi": [1, 4, 6, 7, 11], "through": [4, 6], "tip": 5, "tk": 1, "tk_flowchart": 1, "tk_loop": 2, "tkloop": [1, 2], "tknode": 1, "too": 1, "tox": 4, "traceback": 10, "travi": 4, "travisci": 10, "troubleshoot": 4, "two": [1, 9], "two_valu": 1, "type": [1, 5, 9], "under": 7, "up": [4, 9, 10], "updat": [4, 9, 10], "us": [1, 4, 8, 9, 10, 11], "usag": 5, "user": [9, 10, 11], "usual": 1, "valu": [1, 10], "variabl": [1, 10], "version": [1, 2, 4, 10], "view": 10, "virtualenv": 4, "virtualenvwrapp": 4, "volunt": 4, "w": 1, "wa": [7, 10], "wai": [4, 10], "want": 4, "warn": 1, "web": 4, "websit": 4, "welcom": 4, "well": 10, "what": 1, "when": [4, 10], "where": [1, 10], "whether": 4, "which": [1, 7, 10], "whoever": 4, "why": 3, "widget": 1, "wish": 9, "work": [4, 10], "working_path": [1, 2], "would": 4, "wrap": 10, "write": [1, 10], "write_final_structur": [1, 2], "wrote": 10, "x": 1, "xxxx": 12, "y": 1, "you": [3, 4, 6, 9], "your": [4, 6, 9], "your_name_her": 4}, "titles": ["API Documentation", "loop_step package", "loop_step", "Development Team", "Contributing", "Developer Documentation", "Installation", "SEAMM Loop Plug-in", "Usage", "Getting Started", "History", "Loop Step", "User Guide"], "titleterms": {"0": 10, "01": 10, "07": 10, "1": 10, "10": 10, "11": 10, "12": 10, "13": 10, "15": 10, "17": 10, "2": 10, "2019": 10, "2020": 10, "2021": 10, "23": 10, "25": 10, "29": 10, "3": 10, "4": 10, "6": 10, "7": 10, "8": 10, "9": 10, "acknowledg": 7, "api": 0, "april": 10, "august": 10, "bug": 4, "content": 1, "contribut": 4, "decemb": 10, "develop": [3, 5], "document": [0, 4, 5], "featur": [4, 7], "februari": 10, "feedback": 4, "fix": 4, "from": 6, "get": [4, 9], "guid": 12, "guidelin": 4, "histori": 10, "implement": 4, "index": 12, "indic": [0, 5], "inform": 11, "instal": [6, 9], "juli": 10, "loop": [1, 7, 11], "loop_paramet": 1, "loop_step": [1, 2], "modul": 1, "more": 11, "novemb": 10, "octob": 10, "packag": 1, "plug": 7, "pull": 4, "releas": 6, "replac": 9, "report": 4, "request": 4, "seamm": 7, "septemb": 10, "sourc": 6, "stabl": 6, "start": [4, 9], "step": 11, "submit": 4, "submodul": 1, "tabl": [0, 5], "team": 3, "thi": 9, "tip": 4, "tk_loop": 1, "type": 4, "usag": 8, "user": 12, "write": 4}})
\ No newline at end of file
diff --git a/user_guide/index.html b/user_guide/index.html
index 7956b2c..785b6ee 100644
--- a/user_guide/index.html
+++ b/user_guide/index.html
@@ -8,7 +8,7 @@
- User Guide — SEAMM Loop Plug-in 2024.8.23 documentation
+ User Guide — SEAMM Loop Plug-in 2024.10.15 documentation
@@ -46,8 +46,8 @@
})(window,document,'script','dataLayer','GTM-PQXXTJ2');
-
-
+
+