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NEWS
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20150322
New in this release:
* --number-of-cores respects 'taskset' on GNU/Linux.
* --joblog --pipe gives the data send and received in the log.
* GNU Parallel was tested to support 100 GB sized records in --pipe. A
few bugs was fixed to support >2 GB records. It works, but is rather
slow.
* GNU Parallel was cited in: RIG: Recalibration and Interrelation of
genomic sequence data with the GATK
http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html
* GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
Improving metagenomic analysis with high performance classification
and wide taxonomic attachment
http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&
* GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
shaped by declining effective population size
http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf
* GNU Parallel was cited in: Evidence for DCO+ as a probe of
ionization in the warm disk surface
http://arxiv.org/pdf/1503.02659.pdf
* GNU Parallel was cited in: De novo assembly and annotation of the
Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
from raw genomic reads and comparative analysis with the yellow
fever mosquito (Aedes aegypti)
http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf
* GNU Parallel was cited in: A General Approach to Network
Configuration Analysis
http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf
* GNU Parallel was cited in: Scrimer: designing primers from
transcriptome data
http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf
* GNU Parallel was cited in: Efficient Retrieval of Key Material for
Inspecting Potentially Malicious Traffic in the Cloud
http://sacko.uk/pdf/2015.1.pdf
* GNU Parallel will be presented at Strataconf: Poor Man's Parallel
Pipelines
http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031
* GNU Parallel was used in:
https://github.com/alexbyrnes/FCC-Political-Ads_The-Code
* GNU Parallel was used in: https://github.com/martymac/fpart
* GNU Parallel was used in:
https://github.com/hoytak/diabetic-retinopathy-code
* GNU Parallel was used in:
https://github.com/mehmattski/HybSeqPipeline
* GNU Parallel was used in:
http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm
* Using GNU Parallel on a Raspberry Pi cluster:
http://www.dcglug.org.uk/cluster-progress/
* An introduction to vector tiling and map reduce in postgis:
http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/
* Running scripts in parallel with GNU Parallel:
http://code.jasonbhill.com/2015/03/
* Mahout: Parallelising the creation of DecisionTrees:
http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/
* High-Performance Scientific Computing: Running serial jobs in
parallel
https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf
* Parallel cardinality on your laptop
https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/
* Experiments about a better locate using grep
http://a3nm.net/blog/better_locate.html
* Homework with GNU Parallel:
https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html
* Parallel - Jobs in Skripten parallelisieren:
https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612
* GNU Parallel, czyli 100% użycia procesora
http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html
* Bug fixes and man page updates.
20150222
* --tmux has gotten a major overhaul.
* GNU Parallel was cited in: RaftLib: A C++ Template Library for High
Performance Stream Parallel Processing
http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
* GNU Parallel was cited in: Towards Collaborative Exploration and
Analysis of Big Data from Mars: A Noachis Terra Case Study
http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
* GNU Parallel was cited in: Quantifying properties of hot and dense
QCD matter through systematic model-to-data comparison
http://arxiv.org/pdf/1502.00339.pdf
* GNU Parallel was cited in: Towards Collaborative Exploration and
Analysis of Big Data from Mars: A Noachis Terra Case Study
http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
* GNU Parallel was cited in: Towards Recommender Engineering Tools and
Experiments for Identifying Recommender Differences
http://elehack.net/research/thesis/mde-thesis.pdf
* GNU Parallel was used (unfortunately with wrong citation) in:
Performance and Scaling Comparison Study of RDBMS and NoSQL
(MongoDB)
http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
* GNU Parallel was used (unfortunately without citation) in: Parallel
Implementation of Big Data Pre-Processing Algorithms for Sentiment
Analysis of Social Networking Data
http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
* GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
Ultra-fast personal genome analysis and interpretation
http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
* Zip Folders with GNU Parallel
http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html
* Using GNU Parallel with Freesurfer
http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
* GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
* Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
* Bug fixes and man page updates.
20150122
* Remote jobs now send stderr (standard error) to stderr (standard
error) instead of stdout (standard output).
* Remote execution command is now packed using base64 encoded
bzip2. This means that big environments (app. 100 KB) can be
transferred. This change makes remote execution alpha quality.
* --semaphoretimeout now takes a negative value. This means give up if
the semaphore is not gotten within the timeout.
* --halt -1 and -2 now means halt if a job succeeds (so the opposite
of 1 and 2).
* --no-keep-order will reverse --keep-order.
* Bash's second fix of shellshock caused --env to break again when
exporting functions. This has been fixed again.
* A semibig refactoring of big functions. All non-trivial functions
are now less than 100 lines. The refactoring makes this release beta
quality.
* A description of the design decisions for GNU Parallel can be found
in 'man parallel_design'.
* A bug fix in replacement strings caused rewrite of the replacement
function. This makes use of replacement strings alpha quality.
* GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
the Histological Quantification of Whole Slide Images
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
* GNU Parallel was cited in: Improving Energy and Performance with
Spintronics Caches in Multicore Systems
http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
* GNU Parallel was cited in: Parallel post-processing with MPI-Bash
http://dl.acm.org/citation.cfm?id=2691137
* GNU Parallel was cited in: Distinguishing cause from effect using
observational data: methods and benchmarks
http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
* GNU Parallel was cited in: Data Science at the Command Line
http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
* GNU Parallel was cited in: Resolution of Genetic Map Expansion
Caused by Excess Heterozygosity in Plant Recombinant Inbred
Populations http://www.g3journal.org/content/4/10/1963.full.pdf
* GNU Parallel was cited in: Bayesian Inference of Protein Structure
from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
* GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
* GNU Parallel was cited in: Web-scale content reuse detection
ftp://info.isi.edu/isi-pubs/tr-692.pdf
* GNU Parallel was cited in: Computação Verde na Camada de Aplicação
https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
* GNU Parallel was cited in: Frameshift alignment: statistics and
post-genomic applications
http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
* GNU Parallel was cited in: Towards Recommender Engineering Tools and
Experiments for Identifying Recommender Differences
http://elehack.net/research/thesis/mde-thesis.pdf
* GNU Parallel was cited in: Speaker Environment Classification Using
Rhythm Metrics in Levantine Arabic Dialect
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918
* GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
http://arxiv.org/pdf/1501.02155.pdf
* GNU Parallel was cited in: Allocation Policy Analysis for Cache
Coherence Protocols for STT-MRAM-based caches
http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf
* GNU Parallel was cited in: Using Trusted Platform Module for
securing virtual environment access in Cloud
http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf
* GNU Parallel was cited in: Weakly Supervised Learning for
Compositional Sentiment Recognition
http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf
* GNU Parallel was cited in: Agility and Performance in Elastic
Distributed Storage http://dl.acm.org/citation.cfm?id=2668129
* GNU Parallel was used (unfortunately without citation) in: Large
Scale Author Name Disambiguation in Digital Libraries
http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf
* GNU Parallel is used in BEDOPS:
https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf
* Job ad asking for GNU Parallel skills:
http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs
* GNU Parallel: Open Source For You (OSFY) magazine, October 2013
edition
http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
* Multithreaded Encryption and Compression
http://www.krazyworks.com/multithreaded-encryption-and-compression/
* GNU Parallel on OSX and Linux
https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/
* How to build gnu parallel from source on Ubuntu PC?
http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
* GNU parallel for openaddr-process-one
https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
* From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
* Software Development Tooling
http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf
* コマンドを並列に実行するGNU parallelがとても便利
http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
* Bug fixes and man page updates.
20141122
* Remote systems can be divided into hostgroups (e.g. web and db) by
prepending '@groupname/' to the sshlogin. Multiple groups can be
given by separating groups with '+'. E.g. @web/www1 @web+db/www2
@db/mariadb
* Remote execution can be restricted to servers that are part of one
or more groups by '@groupname' as an sshlogin. Multiple groups can
be given by separating groups with '+'. E.g. -S @web or -S @db+web
* With --hostgroup you can restrict arguments to certain hostgroups by
appending '@groupname' to the argument. Multiple groups can be
given by separating groups with '+'. E.g. my_web_arg@web
db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
developing a prototype for this.
* GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
Massively Parallel Sequencing Data Analysis using Hadoop
http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf
* GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
the Histological Quantification of Whole Slide Images
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289#close
* GNU Parallel was cited in: Exploring a multiprocessor design space
to analyze the impact of using STT-RAM in the memory hierarchy
http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf
* Command-Line OCR with Tesseract on Mac OS X
https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html
* Bug fixes and man page updates.
20141022
* --env was changed to deal with Bash's new way of exporting a function.
* GNU Parallel was cited in: Exclusion of cosmic rays in
protoplanetary disks. II. Chemical gradients and observational
signatures http://iopscience.iop.org/0004-637X/794/2/123/article
* GNU Parallel was cited in: Application of Machine Learning to
Algorithm Selection for TSP
http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf
* GNU Parallel was cited in: Performance Models for LTE-Advanced
Random Access
http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf
* GNU Parallel was used (unfortunately without citation) in: De Novo
Insertions and Deletions of Predominantly Paternal Origin Are
Associated with Autism Spectrum Disorder
http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf
* GNU Parallel was determined 'popular' by Statistical Analysis of
Popular Open Source Software Projects and Their Communities
http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf
* GNU Parallel is demonstrated in: Data Science at the Command Line:
Facing the Future with Time-Tested Tools
* GNU Parallel was covered in a talk at Sydney Perl Mongers group
http://www.openfusion.net/talks/pwp/#24
* GNU Parallel and how to get started with it
http://www.jduck.net/blog/2014/09/30/gnu-paralell/
* Behat/Selenium/Parallel
http://jaffamonkey.com/behat-selenium-parallel/
* Comparing Golang, Scala, Elixir and Ruby for ETL
http://www.dimroc.com/2014/09/29/etl-language-showdown/
* Parallelizing Batch Jobs for Fun and Profit
http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs
* Assemble a list of which of these hosts are up or down
http://opsfun.wordpress.com/2014/03/31/gnu-parallel/
* Running commands on many nodes simultaneously
http://opsfun.wordpress.com/2014/03/31/19/
* Ubuntu 13.04でGNU ParallelをGNUモードで動かす
http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85
* Bug fixes and man page updates.
20140922
* If the file give as --sshloginfile is changed it will be re-read
when a job finishes though at most once per second. This makes it
possible to add and remove hosts while running.
* Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2
* OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/
* GNU Parallel was presented at Balti and Bioinformatics "On-Air"
http://youtu.be/UtXlr19xTh8?t=2h5m0s
* Pleiades Plus uses GNU Parallel
https://github.com/ryanfb/pleiades-plus
* Imagemagick and GNU Parallel
http://deepdish.io/2014/09/15/gnu-parallel/
* GNU Parallel (Sebuah Uji Coba)
http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/
* GNU Parallel: 并行执行Linux命令
http://blog.csdn.net/xzz_hust/article/details/39183837
20140822
* GNU Parallel now uses the same shell it was started from as the
command shell for local jobs. So if GNU Parallel is started from
tcsh it will use tcsh as its shell even if the login $SHELL is
different. For remote jobs the login $SHELL will be used.
* The whole current environment in bash can be copied by using a shell
wrapper function (Search manual for env_parallel).
* --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
{...} {/..} {/...}. The idea being that '+foo' matches the opposite
of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
= {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
* GNU Parallel now deals correctly with the combination
rsync-3.1.X-client and rsync-2.5.7-server
* GNU Parallel was cited in: A Web Service for Scholarly Big Data
Information Extraction
http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf
* Comparison of the speed of different GNU Parallel versions:
http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html
* GNU Parallel was covered in the webcast 2014-08-20: Data Science at
the Command Line http://www.oreilly.com/pub/e/3115
* Distributed processing with GNU parallel
http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel
* A Peek into GNU Parallel
http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel
* Сборка GNU parallel для CentOS/RHEL
http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html
* Bug fixes and man page updates.
20140722
* {= perl expression =} can be used as replacement string. The
expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
the string. This makes replacement strings extremely flexible.
* Positional perl expressions (similar to {2}) are given as {=2 perl
expression=} where 2 is the position.
* One small backwards incompatibility: {1}_{2} will replace {2} with
the empty string if there is only one argument. Previously {2} would
have been left untouched.
* Replacement strings can be defined using --rpl. E.g. parallel --rpl
'{.gz} s/\.gz$//' echo {.gz} ::: *.gz
* The parenthesis around {= perl expression =} can be changed with
--parens.
* --tmux will direct the output to a tmux session instead of
files. Each running jobs will be in its own window.
* --halt 10% will stop spawning new jobs if 10% failed so far.
* GNU Parallel was cited in: bammds: A tool for assessing the ancestry
of low depth whole genome data using multidimensional scaling (MDS)
http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract
* GNU Parallel was cited in: Molecular ferroelectric contributions to
anomalous hysteresis in hybrid perovskite solar cells
http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf
* GNU Parallel was cited in: Energy Sorghum-a genetic model for the
design of C4 grass bioenergy crops
http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short
* GNU Parallel was cited in: Web-scale Content Reuse Detection
www.isi.edu/~johnh/PAPERS/Ardi14a.pdf
* Tell your friends to sign up for the Webcast at 2014-08-20 covering
GNU Parallel: Data Science at the Command Line
http://www.oreilly.com/pub/e/3115
* GNU Parallel all the things!
http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/
* Shell command composition and dispatch
http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html
* Parallelising plink (or anything else) the easy way
http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/
* Easy and cheap cluster building on AWS
https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html
* Paralelizace běžných činností v konzoli pomocí GNU Parallel
http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel
* [原] Ubuntu 下使用 parallel 命令的注意事项
http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html
* 简单的并行, 可使用GNU parallel
http://jerkwin.github.io/2014/06/10/GNU-parallel/
* Bug fixes and man page updates.
20140622
* --shebang and --shebang-wrap now works on FreeBSD.
* --pipepart works with --header, --regexp, --cat and --fifo.
* ./configure --disable-documentation will not build documentation.
* {%} works as job slot.
* GNU Parallel was cited in: Energy Efficient, High-speed
Communication in WSNs
https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf
* GNU Parallel was cited in: Ferroelectric contributions to anomalous
hysteresis in hybrid perovskite solar cells
http://arxiv.org/pdf/1405.5810.pdf
* Processes Paralleling to Speed up Computing and Tasks Execution in
Linux
http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux
* Moving / Copying lots of s3 files quickly using gnu parallel
http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/
* Speeding up grep log queries with GNU Parallel
http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/
* Ubuntu - Gnu parallel - It's awesome
http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html
* Export quicklooks with vector overlay using TuiView
http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/
* GNU Parallel指南 http://my.oschina.net/enyo/blog/271612
* GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301
* Bug fixes and man page updates.
20140522
* Use --semaphoretimeout to ignore the semaphore lock after a while.
* {%} introduced as job slot replacement string. It has known bugs.
* --slotreplace changes slot replacement string.
* GNU Parallel officially in Solaris 11.2beta
https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
* GNU Parallel was cited in: A Comparison of Antenna Placement
Algorithms http://abhinavjauhri.com/publications/eap.pdf
* Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
* BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
* Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
* Convert FLAC to MP3 with GNU parallel
http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
* JD Edwards Business Function Documentation
http://www.azertech.net/content/jd-edwards-business-function-documentation
* Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
* How I start a bioinformatics project
http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
* No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
* Bug fixes and man page updates.
20140422
* --pipepart is a highly efficient alternative to --pipe if the input
is a real file and not a pipe.
* If using --cat or --fifo with --pipe the {} in the command will be
replaced with the name of a physical file and a fifo respectively
containing the block from --pipe. Useful for commands that cannot
read from standard input (stdin).
* --controlmaster has gotten an overhaul and is no longer
experimental.
* --env is now copied when determining CPUs on remote system. Useful
for copying $PATH if parallel is not in the normal path.
* --results now chops the argument if the argument is longer than the
allowed path length.
* Build now survives if pod2* are not installed.
* The git repository now contains tags of releases.
* GNU Parallel was cited in: Proactive System for Digital Forensic
Investigation
http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf
* GNU Parallel was cited in: Beyond MAP estimation with the
track-oriented multiple hypothesis tracker
http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651
* GNU Parallel was cited in: Prokka: rapid prokaryotic genome
annotation
http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short
* GNU Parallel was used (unfortunately with improper citation) in:
Perspectives in magnetic resonance: NMR in the post-FFT era
http://www.sciencedirect.com/science/article/pii/S1090780713003054
* GNU Parallel is used in https://github.com/cc2qe/speedseq
* Batch XML validation at the command line.
http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html
* freebayes-parallel uses GNU Parallel
https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281
* Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2
* Speeding Up Grep Log Queries with GNU Parallel
http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/
* How to run tbss_2_reg in parallel
http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html
* GNU parallel example: blastn https://asciinema.org/a/8775
* Iterative DNS Brute Forcing
http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/
* Ejecutando comandos en paralelo
http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/
* Ejecutando en paralelo en bash (ejemplo con rsync)
http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html
* Bug fixes and man page updates.
20140322
* Offical package for Alpine Linux now exists:
http://alpinelinux.org/apk/main/x86/parallel
* GNU Parallel was cited in: Estimating uncertainties in statistics
computed from direct numerical simulation
http://dx.doi.org/10.1063/1.4866813
* GNU Parallel was cited in: Vehicle routing problems with time
windows and multiple service workers: a systematic comparison
between ACO and GRASP
http://link.springer.com/article/10.1007/s10100-014-0341-z
* GNU Parallel, quick and easy
http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/
* Using Multiple CPU Cores With Command Line Tools
http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/
* Batch convert mp3 CBR to VBR
http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/
* Running Behat in parallel with Selenium grid
http://zalas.eu/running-behat-in-parallel-with-selenium-grid/
* Git-Mirror per cronjob aktuell halten
https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/
* Пишем многопоточный скрипт на bash
http://dafter.ru/duf/howto/130.html
* 如何利用多核CPU来加速你的Linux命令
http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html
* Bug fixes and man page updates.
20140222
* --tollef has been retired.
* --compress has be redesigned due to bugs.
* Format of --eta and --joblog has changed slightly.
* GNU Parallel was cited in: Speaker Verification and Keyword Spotting
Systems for Forensic Applications
http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
* GNU Parallel was cited in: Scaleable Code Clone Detection
http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
* GNU Parallel was cited in: Clone Detection that scales
http://scg.unibe.ch/archive/masters/Vogt14a.pdf
* GNU Parallel was cited in: Scalable Positional Analysis for Studying
Evolution of Nodes in Networks
http://arxiv-web3.library.cornell.edu/pdf/1402.3797
* GNU Parallel was cited in: Aggregate Characterization of User
Behavior in Twitter and Analysis of the Retweet Graph
http://arxiv.org/pdf/1402.2671v1
* GNU Parallel was used (unfortunately without citation) in: Causal
Network Models for Predicting Compound Targets and Driving Pathways
in Cancer
http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
* GNU Parallel was used (unfortunately without citation) in:
Performance and Energy Efficiency of Common Compression /
Decompression Utilities
http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
* GNU Parallel was used (unfortunately without citation) in: SpringFS:
Bridging Agility and Performance in Elastic Distributed Storage
http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
* GNU Parallel was recommended (without citation) in: Redesigning the
Specificity of Protein-DNA Interactions with Rosetta
http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
* GNU Parallel is co-distributed with RepeatExplorer
http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
* Convert MP3 to a scrolling spectrum waterfall plot video
http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
* PHP wrapper class for the GNU Parallel tool
https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
* Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
* Copias de archivos con rsync y parallel
http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
* Single-Thread-Programme auf Multicore-Rechnern parallelisieren
http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
* Распараллеливаем процессы для ускорения вычислений и выполнения
заданий в Linux http://savepearlharbor.com/?p=210480
* Bug fixes and man page updates.
20140122
* GNU Parallel was cited in: On the likelihood of multiple bit upsets
in logic circuits
http://arxiv-web3.library.cornell.edu/pdf/1401.1003
* HaploClique uses GNU Parallel
https://github.com/armintoepfer/haploclique
* Scraping NSScreencast
https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/
* 30 Cool Open Source Software I Discovered in 2013
http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/
* [Unix] 13. The power of doing things in Parallel
http://leetaey.tistory.com/384
* Parallel the execution of a job that read from stdin
http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin
* Mon Make à moi (6:38-11:50)
http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html
* Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
effizienter in der Shell arbeiten
https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/
* Summary of GNU Parallel tutorial
http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html
* Bug fixes and man page updates.
20131222
* GNU Parallel now has a motto: For people who live life in the
parallel lane.
* Detect if the buffer dir $TMPDIR runs out of space. This changes a
central piece of code, making this release alpha quality.
* --keep-order --(n)onall will sort according to the sshlogin.
* Detect the number of CPUs on DEC Tru64.
* GNU sql: --list-tables for sqlite3.
* GNU Parallel was cited in: Variational Message-Passing: Extension to
Continuous Variables and Applications in Multi-Target Tracking
http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
* GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
Related Genomes
https://www.duo.uio.no/handle/10852/37431
* GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
sediment samples
http://repositorio.ul.pt/handle/10451/9436
* GNU Parallel was cited in: Diacritization, automatic segmentation
and labeling for Levantine Arabic speech
http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
* GNU Parallel was cited in: Investigation of emotion classification
using speech rhythm metrics
http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
* GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
and Non-Native Speaking Styles
http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
* GNU Parallel was cited in: Evolutionary optimization of wetlands
design
http://dl.acm.org/citation.cfm?id=2480400
* GNU Parallel was cited (unfortunately with wrong citation) in:
RDBMS vs NoSQL: Performance and Scaling Comparison
http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
* GNU Parallel was used (without proper citation) in: Comprehensive
Analysis Pipeline for Discovery of Human Genetic Variation
http://www.google.com/patents/US20130311106
* Encrypt and decrypt in parallel with GPG
http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/
* Using GNU Parallel to create a SVM classifier
http://ivanyu.me/blog/2013/12/01/parallel/
* Parallel xz compression
http://anthon.home.xs4all.nl/rants/2013/parallel_xz/
* Got CPUs to burn? Put 'em to work with GNU parallel
http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html
* Parallel rsync
http://pastebin.com/JmnB9ffq
* Gnu Parallel for fun and profit
https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3
* Parallelization of Exploitation
http://rantsideasstuff.com/parallelization-of-exploitation/
* Running assemblies in parallel
https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html
* Procesando la contabilidad del PP
http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html
* Mon make à moi (French)
http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy
* Bug fixes and man page updates.
20131122
* A citation notice is printed on stderr only if stderr is a terminal,
the user has not specified --no-notice and the user has not run
--bibtex once. This makes the release alpha quality.
* --compress will compress temporary files. If the output is big and
very compressible this will take up less disk space in $TMPDIR and
possibly be faster due to less disk I/O.
* --compress-program comtrols which program to use for compressing
temporary files.
* --bar show progress as a progress bar compatible with zenity.
* --resume can now be used with --result: Jobs already run will be
skipped.
* --transfer and --basefile support paths relative to the --workdir by
inserting /./ into the path.
* GNU Parallel was cited in: 'fastphylo: Fast tools for phylogenetics'
http://www.biomedcentral.com/1471-2105/14/334/abstract
* Using GNU parallel
http://davetang.org/muse/2013/11/18/using-gnu-parallel/
* Techlux - GNU - Parallel (German)
https://techlux.de/blog/2013/11/07/gnu-parallel/
* awk, sed, bzip2, grep, wc на всех ядрах
http://vk.com/page-30666517_45528467
* 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc
* GNU Parallel (Japanese)
http://jarp.does.notwork.org/diary/201311b.html#20131117
* Bug fixes and man page updates.
20131022
* --transfer files with /./ in the path will copy the files relative
to the --workdir.
* The maximal command length is now cached in a file halfing the
startup time.
* GNU Parallel was cited in: Investigating speaker gender using rhythm
metrics in Arabic dialects
http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
* GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
lastensuojelun asiakaskertomuksista
https://tampub.uta.fi/handle/10024/84978
* Some Additional Useful Bioinformatics Software
http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html
* GNU Parallel Example Screen Cast (bil to Geotiff conversion)
http://www.youtube.com/watch?v=PpF27eC7Mys
* Using GNU Parallel to roll-your-own Map Reduce!
http://www.rankfocus.com/hello-world/
* Use multiple CPU Cores with your Linux commands
http://www.rankfocus.com/use-cpu-cores-linux-commands/
* Using GNU Parallel at HPC @ Uni.lu
https://hpc.uni.lu/users/use_cases/
* Scaling up with parallelization
https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf
* How to teach yourself to be a technical tester
http://infiniteundo.com/post/62421363463/qa-toc
* Faster Rasters For All
http://2013.foss4g.org/conf/programme/presentations/52/
* Optimizing translated file downloads
http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/
* EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/
* Best Practices for Amazon EMR
http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
* Computing checksums for backup
https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg
* Un exemplu de utilizare a programului GNU parallel
http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html
* 平行化你的工作
http://www.slideshare.net/drakeguan/part1-23705978
* なんか気持ちよかです Gnu Parallel
http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel
* Bug fixes and man page updates.
20130922
* PDF-files of documentation is now included.
* Cloning at warp speed 100 VMs in 1 minute using one command line
http://www.beebotech.com.au/tag/command-line/
* Calcul Quebec's introduction to GNU Parallel
https://wiki.calculquebec.ca/w/GNU_parallel
* Brincando com o GNU parallel
http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/
* GNU Parallelで並列処理を行う
http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b
* Bug fixes and man page updates.
20130822