Adapters for OAEI / LogMap format

[cmungall]

I have some LogMap results

• results/logmap/logmap2_mappings.owl
• results/logmap/logmap2_mappings.rdf
• results/logmap/logmap2_mappings.tsv
• results/logmap/logmap2_mappings.txt

it's fairly easy to coerce the tsv or txt into sssom.tsv using a 3-line perl script, but would like a more robust way of doing this

I'm not sure which of the above are formal OAEI formats, but it seems there should be a standard place for OAEI adapters, either this package, a standalone, or OAK.

[matentzn]

Already in sssom-py!

https://github.com/mapping-commons/sssom-py/blob/master/sssom/parsers.py#L722

[cmungall]

ah ok, this is not so well exposed in the public API must can be addressed in

• Make the API layer more conventional #376

Looking at the LogMap results it seems that it doesn't produce this format, but I don't know if sssom-py should support every tool's format, or if instead we should petition the tools to produce sssom

[matentzn]

The format has an ".rdf" extension:

See here my logmap runner script for SSSOM experiments:

https://github.com/matentzn/symbiont/blob/master/config/logmap#L30