diff --git a/poetry.lock b/poetry.lock
index 4b1f010f..bba8b8fc 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
[[package]]
name = "alabaster"
@@ -13,13 +13,13 @@ files = [
[[package]]
name = "annotated-types"
-version = "0.6.0"
+version = "0.7.0"
description = "Reusable constraint types to use with typing.Annotated"
optional = false
python-versions = ">=3.8"
files = [
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[package.dependencies]
@@ -46,13 +46,13 @@ tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "p
[[package]]
name = "babel"
-version = "2.14.0"
+version = "2.15.0"
description = "Internationalization utilities"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
files = [
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]
[package.dependencies]
@@ -74,13 +74,13 @@ files = [
[[package]]
name = "certifi"
-version = "2024.2.2"
+version = "2024.6.2"
description = "Python package for providing Mozilla's CA Bundle."
optional = false
python-versions = ">=3.6"
files = [
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- {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
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]
[[package]]
@@ -311,18 +311,18 @@ test = ["pytest (>=6)"]
[[package]]
name = "filelock"
-version = "3.14.0"
+version = "3.15.1"
description = "A platform independent file lock."
optional = false
python-versions = ">=3.8"
files = [
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+testing = ["covdefaults (>=2.3)", "coverage (>=7.3.2)", "diff-cover (>=8.0.1)", "pytest (>=7.4.3)", "pytest-asyncio (>=0.21)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)", "pytest-timeout (>=2.2)"]
typing = ["typing-extensions (>=4.8)"]
[[package]]
@@ -493,13 +493,13 @@ six = "*"
[[package]]
name = "jinja2"
-version = "3.1.3"
+version = "3.1.4"
description = "A very fast and expressive template engine."
optional = false
python-versions = ">=3.7"
files = [
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@@ -539,13 +539,13 @@ hbreader = "*"
[[package]]
name = "jsonschema"
-version = "4.21.1"
+version = "4.22.0"
description = "An implementation of JSON Schema validation for Python"
optional = false
python-versions = ">=3.8"
files = [
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@@ -577,13 +577,13 @@ referencing = ">=0.31.0"
[[package]]
name = "linkml-runtime"
-version = "1.7.5"
+version = "1.7.7"
description = "Runtime environment for LinkML, the Linked open data modeling language"
optional = false
python-versions = "<4.0,>=3.8"
files = [
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@@ -696,13 +696,13 @@ files = [
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name = "mdit-py-plugins"
-version = "0.4.0"
+version = "0.4.1"
description = "Collection of plugins for markdown-it-py"
optional = false
python-versions = ">=3.8"
files = [
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@@ -807,13 +807,13 @@ files = [
[[package]]
name = "packaging"
-version = "24.0"
+version = "24.1"
description = "Core utilities for Python packages"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
files = [
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@@ -912,13 +912,13 @@ files = [
[[package]]
name = "platformdirs"
-version = "4.2.1"
+version = "4.2.2"
description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
optional = false
python-versions = ">=3.8"
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@@ -975,18 +975,18 @@ pyyaml = ">=5.3.1"
[[package]]
name = "pydantic"
-version = "2.7.1"
+version = "2.7.4"
description = "Data validation using Python type hints"
optional = false
python-versions = ">=3.8"
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+pydantic-core = "2.18.4"
typing-extensions = ">=4.6.1"
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@@ -994,90 +994,90 @@ email = ["email-validator (>=2.0.0)"]
[[package]]
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+ {file = "validators-0.28.3-py3-none-any.whl", hash = "sha256:53cafa854f13850156259d9cc479b864ee901f6a96e6b109e6fc33f98f37d99f"},
+ {file = "validators-0.28.3.tar.gz", hash = "sha256:c6c79840bcde9ba77b19f6218f7738188115e27830cbaff43264bc4ed24c429d"},
]
[[package]]
name = "virtualenv"
-version = "20.26.1"
+version = "20.26.2"
description = "Virtual Python Environment builder"
optional = false
python-versions = ">=3.7"
files = [
- {file = "virtualenv-20.26.1-py3-none-any.whl", hash = "sha256:7aa9982a728ae5892558bff6a2839c00b9ed145523ece2274fad6f414690ae75"},
- {file = "virtualenv-20.26.1.tar.gz", hash = "sha256:604bfdceaeece392802e6ae48e69cec49168b9c5f4a44e483963f9242eb0e78b"},
+ {file = "virtualenv-20.26.2-py3-none-any.whl", hash = "sha256:a624db5e94f01ad993d476b9ee5346fdf7b9de43ccaee0e0197012dc838a0e9b"},
+ {file = "virtualenv-20.26.2.tar.gz", hash = "sha256:82bf0f4eebbb78d36ddaee0283d43fe5736b53880b8a8cdcd37390a07ac3741c"},
]
[package.dependencies]
@@ -2002,18 +2001,18 @@ files = [
[[package]]
name = "zipp"
-version = "3.18.1"
+version = "3.19.2"
description = "Backport of pathlib-compatible object wrapper for zip files"
optional = false
python-versions = ">=3.8"
files = [
- {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"},
- {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"},
+ {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"},
+ {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"},
]
[package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
[metadata]
lock-version = "2.0"
diff --git a/tests/update_validate_data.sh b/tests/update_validate_data.sh
new file mode 100644
index 00000000..1d0100cc
--- /dev/null
+++ b/tests/update_validate_data.sh
@@ -0,0 +1,12 @@
+set -e
+
+poetry run sssom convert data/basic.tsv -O json -o validate_data/basic.tsv.json
+poetry run sssom convert data/basic.tsv -O owl -o validate_data/basic.tsv.owl
+poetry run sssom convert data/basic.tsv -O rdf -o validate_data/basic.tsv.rdf
+poetry run sssom convert data/basic.tsv -O tsv -o validate_data/basic.tsv.tsv
+poetry run sssom convert data/cob-to-external.tsv -O json -o validate_data/cob-to-external.tsv.json
+poetry run sssom convert data/cob-to-external.tsv -O owl -o validate_data/cob-to-external.tsv.owl
+poetry run sssom convert data/cob-to-external.tsv -O rdf -o validate_data/cob-to-external.tsv.rdf
+poetry run sssom convert data/cob-to-external.tsv -O tsv -o validate_data/cob-to-external.tsv.tsv
+poetry run sssom parse data/hp-base.json -I obographs-json -o validate_data/hp-base.json.tsv
+poetry run sssom parse data/oaei-ordo-hp.rdf -I alignment-api-xml -o validate_data/oaei-ordo-hp.rdf.tsv
diff --git a/tests/validate_data/basic.jsonld b/tests/validate_data/basic.jsonld
deleted file mode 100644
index 28f873db..00000000
--- a/tests/validate_data/basic.jsonld
+++ /dev/null
@@ -1,12748 +0,0 @@
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- },
- {
- "@id": "http://example.org/x/heart"
- }
- ]
- },
- {
- "@id": "http://example.org/z/foot",
- "http://www.w3.org/2002/07/owl#equivalentClass": [
- {
- "@id": "http://example.org/x/foot"
- },
- {
- "@id": "http://example.org/y/foot"
- }
- ]
- },
- {
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- ]
- },
- {
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- }
- ]
- },
- {
- "@id": "http://example.org/x/hindlimb",
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- "@id": "http://example.org/z/hindlimb"
- }
- ]
- },
- {
- "@id": "http://example.org/y/organ",
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- {
- "@id": "http://example.org/z/organ"
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- {
- "@id": "http://example.org/z/hand",
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- }
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- },
- {
- "@id": "http://example.org/y/bone"
- },
- {
- "@id": "http://example.org/x/bone_tissue"
- }
- ]
- },
- {
- "@id": "http://example.org/x/bone_tissue",
- "http://www.w3.org/2002/07/owl#equivalentClass": [
- {
- "@id": "http://example.org/y/bone"
- },
- {
- "@id": "http://example.org/z/bone_tissue"
- },
- {
- "@id": "http://example.org/z/bone_element"
- }
- ]
- },
- {
- "@id": "http://example.org/z/appendage",
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- "@id": "http://example.org/y/appendage"
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- "@id": "http://example.org/z/organ"
- }
- ]
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- {
- "@id": "http://example.org/z/bone_tissue",
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- {
- "@id": "_:N6786067fd0244be690aae3b3a551175a",
- "@type": [
- "https://w3id.org/sssom/MappingSet"
- ],
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- }
- ],
- "https://w3id.org/sssom/creator_id": [
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- "https://w3id.org/sssom/mapping_date": [
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- "https://w3id.org/sssom/object_category": [
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- "https://w3id.org/sssom/subject_category": [
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- "https://w3id.org/sssom/object_category": [
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- "https://w3id.org/sssom/subject_category": [
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- "https://w3id.org/sssom/subject_label": [
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- "https://w3id.org/sssom/object_category": [
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- "@value": "biolink:AnatomicalEntity"
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- "https://w3id.org/sssom/object_label": [
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- "@value": "ORGAN"
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- "https://w3id.org/sssom/object_match_field": [
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- "@id": "http://www.w3.org/2000/01/rdf-schema#label"
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- "https://w3id.org/sssom/object_source": [
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- "https://w3id.org/sssom/subject_category": [
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- "https://w3id.org/sssom/object_category": [
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- "https://w3id.org/sssom/object_category": [
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- "https://w3id.org/sssom/object_match_field": [
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- "https://w3id.org/sssom/subject_category": [
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- "https://w3id.org/sssom/object_category": [
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- "https://w3id.org/sssom/object_category": [
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- "https://w3id.org/sssom/object_label": [
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- "https://w3id.org/sssom/object_match_field": [
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- "https://w3id.org/sssom/object_source": [
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- "https://w3id.org/sssom/subject_category": [
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- "https://w3id.org/sssom/subject_label": [
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- "https://w3id.org/sssom/subject_match_field": [
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- "https://w3id.org/sssom/subject_source": [
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- "http://www.w3.org/2002/07/owl#annotatedTarget": [
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- "@id": "http://example.org/y/lung",
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- "@id": "http://example.org/x/lung"
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- {
- "@id": "http://example.org/x/region",
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- "@id": "http://example.org/z/region"
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- "@id": "http://example.org/y/liver",
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- {
- "@id": "http://example.org/z/liver"
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- {
- "@id": "http://example.org/z/liver",
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- {
- "@id": "http://example.org/y/liver"
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- {
- "@id": "http://example.org/x/liver"
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- {
- "@id": "http://example.org/y/tissue",
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- {
- "@id": "http://example.org/z/tissue"
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- {
- "@id": "http://example.org/x/tissue"
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- {
- "@id": "http://example.org/y/eye",
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- {
- "@id": "http://example.org/z/eye"
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- {
- "@id": "http://example.org/x/eye"
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- {
- "@id": "http://example.org/z/lung",
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- "@id": "http://example.org/x/lung"
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- "@id": "http://example.org/y/foot",
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- {
- "@id": "http://example.org/z/foot"
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- "@id": "http://example.org/x/foot"
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- {
- "@id": "http://example.org/x/liver",
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- {
- "@id": "http://example.org/z/liver"
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- {
- "@id": "http://example.org/y/liver"
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- {
- "@id": "http://example.org/z/organ"
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- {
- "@id": "http://example.org/x/eyeball",
- "http://www.w3.org/2002/07/owl#equivalentClass": [
- {
- "@id": "http://example.org/z/eyeball"
- }
- ]
- }
-]
diff --git a/tests/validate_data/basic.owl b/tests/validate_data/basic.owl
deleted file mode 100644
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- liver
- semapv:LexicalMatching
- biolink:AnatomicalEntity
- biolink:AnatomicalEntity
- z
- .
-
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- rdf_matcher
- x
-
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-
-
- x
- semapv:semapv:LexicalMatching
- appendage
-
-
- z
- 0.8407144059077161
-
- biolink:AnatomicalEntity
- APPENDAGE
- appendag
-
- biolink:AnatomicalEntity
- .
-
-
- rdf_matcher
-
-
-
- x
- biolink:AnatomicalEntity
-
- ORGAN
- biolink:AnatomicalEntity
- rdf_matcher
- semapv:LexicalMatching
- organ
-
- organ
- .
- z
- 0.8818562360532485
-
-
-
-
-
-
-
- UBERON:0002048
- z
- .
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- lung
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- x
- 0.7387961250362586
-
- biolink:AnatomicalEntity
- semapv:LexicalMatching
- rdf_matcher
- biolink:AnatomicalEntity
-
-
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- biolink:AnatomicalEntity
- rdf_matcher
-
- biolink:AnatomicalEntity
- .
-
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- z
-
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- bone element
- semapv:LexicalMatching
- UBERON:0001474
-
- x
- 0.7387961250362586
-
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- x
- semapv:LexicalMatching
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- biolink:AnatomicalEntity
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- biolink:AnatomicalEntity
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-
- 0.2612038749637414
- .
- z
- bone
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-
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- bone tissue
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- biolink:AnatomicalEntity
- x
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- liver
-
- .
- semapv:semapv:LexicalMatching
-
-
- 0.8407144059077161
- y
-
-
- livers
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- biolink:AnatomicalEntity
- rdf_matcher
-
-
-
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- .
- ORGAN
- heart
-
- biolink:AnatomicalEntity
-
- biolink:AnatomicalEntity
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- BAD:ORGAN
- 0.7387961250362586
-
- semapv:LexicalMatching
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- x
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-
-
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- bone tissue
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- biolink:AnatomicalEntity
- x
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-
-
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- .
- z
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-
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- biolink:AnatomicalEntity
- biolink:AnatomicalEntity
- .
-
- bone
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-
- 0.5346019613807635
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- rdf_matcher
- x
- semapv:semapv:LexicalMatching
- bones
-
- y
-
- bone tissue
-
-
- semapv:semapv:LexicalMatching
- bone element
- bones
-
-
-
- x
-
- biolink:AnatomicalEntity
- .
- 0.6967304549770724
-
- biolink:AnatomicalEntity
- y
- rdf_matcher
- bone el
-
-
-
- bones
-
- bone element
-
- rdf_matcher
-
- bone element
- semapv:LexicalMatching
- x
-
- biolink:AnatomicalEntity
- .
-
- biolink:AnatomicalEntity
- y
-
- 0.7646510369310004
-
-
-
- 0.8407144059077161
- y
-
-
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- rdf_matcher
- z
- biolink:AnatomicalEntity
-
- biolink:AnatomicalEntity
- tissues
- semapv:semapv:LexicalMatching
-
- tissu
- .
- TISSUE
-
-
-
-
-
-
-
-
-
- semapv:semapv:LexicalMatching
- region
-
-
- x
- 0.8407144059077161
- biolink:AnatomicalEntity
- rdf_matcher
- regions
- region
- .
-
- biolink:AnatomicalEntity
- y
-
-
-
-
- feet
- semapv:LexicalMatching
-
- biolink:AnatomicalEntity
- x
- pes
- biolink:AnatomicalEntity
- .
- y
-
- rdf_matcher
-
- UBERON:0002387
-
-
-
- 0.7387961250362586
-
-
- pes
- .
- rdf_matcher
-
-
- x
- foot
-
-
-
- semapv:LexicalMatching
- biolink:AnatomicalEntity
-
- z
-
- biolink:AnatomicalEntity
- 0.8497788951776651
-
-
-
-
-
-
-
-
-
-
-
- biolink:AnatomicalEntity
- .
- foot
-
-
-
- z
-
-
-
-
- x
- semapv:LexicalMatching
- pes
- biolink:AnatomicalEntity
- rdf_matcher
- 0.8497788951776651
-
-
-
-
-
-
-
-
-
-
-
- feet
- UBERON:0002387
-
- biolink:AnatomicalEntity
- semapv:LexicalMatching
- .
- biolink:AnatomicalEntity
- y
-
-
- rdf_matcher
-
-
-
- z
- 0.7387961250362586
-
-
-
-
-
-
-
-
-
- hindlimb
- x
-
- rdf_matcher
- hindlimb
- .
- z
-
-
- biolink:AnatomicalEntity
- semapv:semapv:LexicalMatching
-
- hindlimb
-
- biolink:AnatomicalEntity
- 0.8407144059077161
-
-
-
- y
- organs
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- organ
-
- biolink:AnatomicalEntity
- .
-
- organ
- semapv:semapv:LexicalMatching
-
-
- 0.8407144059077161
- x
- biolink:AnatomicalEntity
-
-
-
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-
-
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-
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-
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diff --git a/tests/validate_data/basic.tsv b/tests/validate_data/basic.tsv
deleted file mode 100644
index 36911bd5..00000000
--- a/tests/validate_data/basic.tsv
+++ /dev/null
@@ -1,152 +0,0 @@
-#comment: .
-#creator_id: cjm
-#curie_map:
-# a: http://example.org/a/
-# rdfs: http://www.w3.org/2000/01/rdf-schema#
-# x: http://example.org/x/
-# y: http://example.org/y/
-# z: http://example.org/z/
-#license: https://creativecommons.org/publicdomain/zero/1.0/
-#mapping_date: '2020-05-30'
-#mapping_tool: https://github.com/cmungall/rdf_matcher
-#object_match_field: rdfs:label
-#object_source: y
-#subject_match_field: rdfs:label
-#subject_source: z
-subject_id subject_label subject_category predicate_id object_id object_label object_category mapping_justification subject_source object_source mapping_tool confidence subject_match_field object_match_field match_string comment
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-x:appendage appendage biolink:AnatomicalEntity owl:equivalentClass z:appendage APPENDAGE biolink:AnatomicalEntity semapv:LexicalMatching x z rdf_matcher 0.8407144059077161 rdfs:label rdfs:label appendag .
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-x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x y rdf_matcher 0.6967304549770724 rdfs:label oio:hasRelatedSynonym bone el .
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-x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x y rdf_matcher 0.5346019613807635 oio:hasBroadSynonym rdfs:label bone .
-x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x z rdf_matcher 0.2612038749637414 oio:hasBroadSynonym oio:hasBroadSynonym bone .
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-x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x z rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002481 .
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-x:eye eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching x y rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0000970 .
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-y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching y z rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002398 .
-y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching y z rdf_matcher 0.8212623907743639 rdfs:label oio:hasExactSynonym hand .
-y:heart hearts biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching y x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0000948 .
-y:heart hearts biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching y x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label heart .
-y:heart hearts biolink:AnatomicalEntity owl:equivalentClass z:heart biolink:AnatomicalEntity semapv:LexicalMatching y z rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0000948 .
-y:liver livers biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching y x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002107 .
-y:liver livers biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching y x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label liver .
-y:liver livers biolink:AnatomicalEntity owl:equivalentClass z:liver biolink:AnatomicalEntity semapv:LexicalMatching y z rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002107 .
-y:lung lungs biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching y x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002048 .
-y:lung lungs biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching y x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label lung .
-y:lung lungs biolink:AnatomicalEntity owl:equivalentClass z:lung biolink:AnatomicalEntity semapv:LexicalMatching y z rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002048 .
-y:organ organs biolink:AnatomicalEntity owl:equivalentClass x:organ organ biolink:AnatomicalEntity semapv:LexicalMatching y x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label organ .
-y:organ organs biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching y z rdf_matcher 0.8407144059077161 rdfs:label rdfs:label organ .
-y:region regions biolink:AnatomicalEntity owl:equivalentClass x:region region biolink:AnatomicalEntity semapv:LexicalMatching y x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label region .
-y:region regions biolink:AnatomicalEntity owl:equivalentClass z:region REGION biolink:AnatomicalEntity semapv:LexicalMatching y z rdf_matcher 0.8407144059077161 rdfs:label rdfs:label region .
-y:tissue tissues biolink:AnatomicalEntity owl:equivalentClass x:tissue tissue biolink:AnatomicalEntity semapv:LexicalMatching y x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label tissu .
-y:tissue tissues biolink:AnatomicalEntity owl:equivalentClass z:tissue TISSUE biolink:AnatomicalEntity semapv:LexicalMatching y z rdf_matcher 0.8407144059077161 rdfs:label rdfs:label tissu .
-z:appendage APPENDAGE biolink:AnatomicalEntity owl:equivalentClass x:appendage appendage biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label appendag .
-z:appendage APPENDAGE biolink:AnatomicalEntity owl:equivalentClass x:appendage appendage biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8818562360532485 rdfs:label rdfs:label appendage .
-z:appendage APPENDAGE biolink:AnatomicalEntity owl:equivalentClass y:appendage appendages biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.8407144059077161 rdfs:label rdfs:label appendag .
-z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0001474 .
-z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.2612038749637414 oio:hasBroadSynonym oio:hasBroadSynonym bone .
-z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone .
-z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.2612038749637414 oio:hasBroadSynonym oio:hasBroadSynonym bone .
-z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone .
-z:bone_element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0001474 .
-z:bone_element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.5346019613807635 oio:hasBroadSynonym rdfs:label bone .
-z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.2612038749637414 oio:hasBroadSynonym oio:hasBroadSynonym bone .
-z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone .
-z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002481 .
-z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.2612038749637414 oio:hasBroadSynonym oio:hasBroadSynonym bone .
-z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone .
-z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.5346019613807635 oio:hasBroadSynonym rdfs:label bone .
-z:eye biolink:AnatomicalEntity owl:equivalentClass x:eye eye biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0000970 .
-z:eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0000970 .
-z:eyeball biolink:AnatomicalEntity owl:equivalentClass x:eyeball eyeball biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0010230 .
-z:foot biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002387 .
-z:foot biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8497788951776651 oio:hasExactSynonym oio:hasExactSynonym foot .
-z:foot biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym foot .
-z:foot biolink:AnatomicalEntity owl:equivalentClass y:foot feet biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002387 .
-z:hand biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002398 .
-z:hand biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8497788951776651 oio:hasExactSynonym oio:hasExactSynonym hand .
-z:hand biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym hand .
-z:hand biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002398 .
-z:hand biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.8212623907743639 oio:hasExactSynonym rdfs:label hand .
-z:heart biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0000948 .
-z:heart biolink:AnatomicalEntity owl:equivalentClass y:heart hearts biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0000948 .
-z:hindlimb hindlimb biolink:AnatomicalEntity owl:equivalentClass x:hindlimb hindlimb biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8818562360532485 rdfs:label rdfs:label hindlimb .
-z:hindlimb hindlimb biolink:AnatomicalEntity owl:equivalentClass x:hindlimb hindlimb biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label hindlimb .
-z:liver biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002107 .
-z:liver biolink:AnatomicalEntity owl:equivalentClass y:liver livers biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002107 .
-z:lung biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002048 .
-z:lung biolink:AnatomicalEntity owl:equivalentClass y:lung lungs biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref UBERON:0002048 .
-z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref BAD:ORGAN .
-z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref BAD:ORGAN .
-z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.7387961250362586 oio:hasDbXref oio:hasDbXref BAD:ORGAN .
-z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:organ organ biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8818562360532485 rdfs:label rdfs:label organ .
-z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:organ organ biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label organ .
-z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass y:organ organs biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.8407144059077161 rdfs:label rdfs:label organ .
-z:region REGION biolink:AnatomicalEntity owl:equivalentClass x:region region biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8818562360532485 rdfs:label rdfs:label region .
-z:region REGION biolink:AnatomicalEntity owl:equivalentClass x:region region biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label region .
-z:region REGION biolink:AnatomicalEntity owl:equivalentClass y:region regions biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.8407144059077161 rdfs:label rdfs:label region .
-z:tissue TISSUE biolink:AnatomicalEntity owl:equivalentClass x:tissue tissue biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8407144059077161 rdfs:label rdfs:label tissu .
-z:tissue TISSUE biolink:AnatomicalEntity owl:equivalentClass x:tissue tissue biolink:AnatomicalEntity semapv:LexicalMatching z x rdf_matcher 0.8818562360532485 rdfs:label rdfs:label tissue .
-z:tissue TISSUE biolink:AnatomicalEntity owl:equivalentClass y:tissue tissues biolink:AnatomicalEntity semapv:LexicalMatching z y rdf_matcher 0.8407144059077161 rdfs:label rdfs:label tissu .
diff --git a/tests/validate_data/basic.tsv.json b/tests/validate_data/basic.tsv.json
index 6e0e8e07..8461e525 100644
--- a/tests/validate_data/basic.tsv.json
+++ b/tests/validate_data/basic.tsv.json
@@ -1 +1,3553 @@
-[{"@id": "http://example.org/x/organ", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/y/organ"}]}, {"@id": "http://example.org/z/bone_element", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/bone_element"}, {"@id": "http://example.org/x/bone_tissue"}, {"@id": "http://example.org/y/bone"}]}, {"@id": "http://example.org/z/eyeball", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/eyeball"}]}, {"@id": "http://example.org/z/eye", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/eye"}, {"@id": "http://example.org/x/eye"}]}, {"@id": "http://example.org/x/foot", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/foot"}, {"@id": "http://example.org/y/foot"}]}, {"@id": "http://example.org/x/liver", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/liver"}, {"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/z/liver"}]}, {"@id": "http://example.org/y/bone", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/bone_tissue"}, {"@id": "http://example.org/z/bone_tissue"}, {"@id": "http://example.org/x/bone_element"}, {"@id": "http://example.org/z/bone_element"}]}, {"@id": "http://example.org/x/eye", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/eye"}, {"@id": "http://example.org/z/eye"}]}, {"@id": "_:N93142a4c6fdf4f9c968448f6252478a4", "@type": ["https://w3id.org/sssom/MappingSet"], "https://w3id.org/sssom/comment": [{"@value": "."}], "https://w3id.org/sssom/creator_id": [{"@id": "file:///Users/matentzn/ws/sssom-py/tests/cjm"}], "https://w3id.org/sssom/license": [{"@value": "https://creativecommons.org/publicdomain/zero/1.0/"}], "https://w3id.org/sssom/mapping_date": [{"@value": "2020-05-30"}], "https://w3id.org/sssom/mapping_tool": [{"@value": "https://github.com/cmungall/rdf_matcher"}], "https://w3id.org/sssom/mappings": [{"@id": "_:N585c7d8772b74455ac4e87ac7d001000"}, {"@id": "_:N317fe36b6e894762be99af5a4e21b2fd"}, {"@id": "_:Nfd5ecb7bc4f946a0ba6fb96b00fec898"}, {"@id": "_:N84498557a13c4f8589c7a99fc9d5b12c"}, {"@id": "_:Na58b738204614ebb82976be303fe83fc"}, {"@id": "_:Ne9986ab4c900487a8e27ecb0522d359d"}, {"@id": "_:N8c796e7670844fc18a86696fcdb7760b"}, {"@id": "_:N753f2bcfd25c4d3aa08a58f452003543"}, {"@id": "_:N6a1f51ff5cfb42a1aa9cf319650ab5f8"}, {"@id": "_:N41c7bbae28e34b66b98e0b9a50ac994c"}, {"@id": "_:N4b7fc3da44c04a13a6c487679ee08925"}, {"@id": "_:N2540dd41de8841f7bb8794af5a967a96"}, {"@id": "_:Nb785d4703ffc43b38f442c84ec1064a8"}, {"@id": "_:Nefb45c800d144a179a2b0d155b1b4e0b"}, {"@id": "_:N131f8b0b11554a22a388fdc0edd713d6"}, {"@id": "_:N387b1d24b5cd4febab73f6aa9daf1c63"}, {"@id": "_:Na71d1e4dd1fe46f0b6a8074493c9f2a3"}, {"@id": "_:Ne325831260bc4559954296f469f4a60b"}, {"@id": "_:N41566fbb2fab4b319251d2d48c5f1123"}, {"@id": "_:N770b677737ea4e3ca690564cd988dd9b"}, {"@id": "_:N9266c64cef9743c980bd596dee6fd48d"}, {"@id": "_:N9e7e2a4add2549219f91b0ade9503b79"}, {"@id": "_:N14c4e9d6db9f4b559935f0f75315e981"}, {"@id": "_:Nef577d1b544142ad931b37e484d7662c"}, {"@id": "_:N91953e56c4cc482ab6ee2c5eb0f385de"}, {"@id": "_:N9edde0472c1648138f5d390d85966f64"}, {"@id": "_:N212272db43ec419b9149e8c63dab0e53"}, {"@id": "_:N768853d18bef4541ae3c9c700c9a63f1"}, {"@id": "_:N808445e1350f48a7ac47fee6882e9f28"}, {"@id": "_:N736e9e95032b4a469b356a9bee5010eb"}, {"@id": "_:N3cfa4d0e9f774d12a420a0512e73fe46"}, {"@id": "_:N93c6e8e9739947b1a6b20396ae07e34a"}, {"@id": "_:Nacb6c7527b3d40ee8801c3c42cc68040"}, {"@id": "_:N556885f92f364e6fac2ba5ee2cdde091"}, {"@id": "_:Nc2fe08fc454d45979357851e1d3c6084"}, {"@id": "_:N7d697dc26b2e4da3b4582e934b0ca107"}, {"@id": "_:N228ca2e10743441aa2fec96570a9c1c1"}, {"@id": "_:Nc71c67f9a75c47e19fe87ed682dcf6c7"}, {"@id": "_:N1270a5e9ab6f49f4a73a69701d7550e8"}, {"@id": "_:Ne97a6ec22cb84b63aa61f7261859bfdc"}, 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"http://www.w3.org/2002/07/owl#annotatedProperty": [{"@id": "http://www.w3.org/2002/07/owl#equivalentClass"}], "http://www.w3.org/2002/07/owl#annotatedSource": [{"@id": "http://example.org/z/bone_tissue"}], "http://www.w3.org/2002/07/owl#annotatedTarget": [{"@id": "http://example.org/x/bone_element"}]}, {"@id": "_:N283f08986e874b20be1696cf09bec06f", "@type": ["http://www.w3.org/2002/07/owl#Axiom"], "https://w3id.org/sssom/comment": [{"@value": "."}], "https://w3id.org/sssom/confidence": [{"@type": "xsd:double", "@value": "0.7387961250362586"}], "https://w3id.org/sssom/mapping_tool": [{"@value": "rdf_matcher"}], "https://w3id.org/sssom/match_string": [{"@value": "UBERON:0002107"}], "https://w3id.org/sssom/mapping_justification": [{"@value": "semapv:LexicalMatching"}], "https://w3id.org/sssom/object_category": [{"@value": "biolink:AnatomicalEntity"}], "https://w3id.org/sssom/object_label": [{"@value": "liver"}], "https://w3id.org/sssom/object_match_field": [{"@id": "oio:hasDbXref"}], "https://w3id.org/sssom/object_source": [{"@value": "x"}], "https://w3id.org/sssom/subject_category": [{"@value": "biolink:AnatomicalEntity"}], "https://w3id.org/sssom/subject_label": [{"@value": "livers"}], "https://w3id.org/sssom/subject_match_field": [{"@id": "oio:hasDbXref"}], "https://w3id.org/sssom/subject_source": [{"@value": "y"}], "http://www.w3.org/2002/07/owl#annotatedProperty": [{"@id": "http://www.w3.org/2002/07/owl#equivalentClass"}], "http://www.w3.org/2002/07/owl#annotatedSource": [{"@id": "http://example.org/y/liver"}], "http://www.w3.org/2002/07/owl#annotatedTarget": [{"@id": "http://example.org/x/liver"}]}, {"@id": "_:Nd2a99a74d02c4d0bbe2e1978385324a6", "@type": ["http://www.w3.org/2002/07/owl#Axiom"], "https://w3id.org/sssom/comment": [{"@value": "."}], "https://w3id.org/sssom/confidence": [{"@type": "xsd:double", "@value": "0.7387961250362586"}], "https://w3id.org/sssom/mapping_tool": [{"@value": "rdf_matcher"}], "https://w3id.org/sssom/match_string": [{"@value": "UBERON:0001474"}], "https://w3id.org/sssom/mapping_justification": [{"@value": "semapv:LexicalMatching"}], "https://w3id.org/sssom/object_category": [{"@value": "biolink:AnatomicalEntity"}], "https://w3id.org/sssom/object_label": [{"@value": "bone element"}], "https://w3id.org/sssom/object_match_field": [{"@id": "oio:hasDbXref"}], "https://w3id.org/sssom/object_source": [{"@value": "x"}], "https://w3id.org/sssom/subject_category": [{"@value": "biolink:AnatomicalEntity"}], "https://w3id.org/sssom/subject_label": [{"@value": "bones"}], "https://w3id.org/sssom/subject_match_field": [{"@id": "oio:hasDbXref"}], "https://w3id.org/sssom/subject_source": [{"@value": "y"}], "http://www.w3.org/2002/07/owl#annotatedProperty": [{"@id": "http://www.w3.org/2002/07/owl#equivalentClass"}], "http://www.w3.org/2002/07/owl#annotatedSource": [{"@id": "http://example.org/y/bone"}], "http://www.w3.org/2002/07/owl#annotatedTarget": [{"@id": "http://example.org/x/bone_element"}]}, {"@id": "http://example.org/z/foot", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/foot"}, {"@id": "http://example.org/x/foot"}]}, {"@id": "http://example.org/y/foot", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/foot"}, {"@id": "http://example.org/z/foot"}]}, {"@id": "http://example.org/x/hindlimb", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/hindlimb"}]}, {"@id": "http://example.org/z/appendage", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/appendage"}, {"@id": "http://example.org/y/appendage"}]}, {"@id": "http://example.org/x/appendage", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/appendage"}, {"@id": "http://example.org/z/appendage"}]}, {"@id": "http://example.org/z/heart", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/heart"}, {"@id": "http://example.org/x/heart"}]}, {"@id": "http://example.org/z/hand", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/hand"}, {"@id": "http://example.org/y/hand"}]}, {"@id": "http://example.org/y/liver", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/liver"}, {"@id": "http://example.org/z/liver"}]}, {"@id": "http://example.org/x/bone_element", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/bone"}, {"@id": "http://example.org/z/bone_tissue"}, {"@id": "http://example.org/z/bone_element"}]}, {"@id": "http://example.org/z/liver", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/liver"}, {"@id": "http://example.org/y/liver"}]}, {"@id": "http://example.org/x/tissue", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/tissue"}, {"@id": "http://example.org/z/tissue"}]}, {"@id": "http://example.org/y/lung", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/lung"}, {"@id": "http://example.org/z/lung"}]}, {"@id": "http://example.org/x/hand", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/hand"}, {"@id": "http://example.org/y/hand"}]}, {"@id": "http://example.org/z/lung", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/lung"}, {"@id": "http://example.org/x/lung"}]}, {"@id": "http://example.org/z/bone_tissue", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/bone_tissue"}, {"@id": "http://example.org/y/bone"}, {"@id": "http://example.org/x/bone_element"}]}, {"@id": "http://example.org/x/bone_tissue", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/bone_element"}, {"@id": "http://example.org/z/bone_tissue"}, {"@id": "http://example.org/y/bone"}]}, {"@id": "http://example.org/y/eye", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/eye"}, {"@id": "http://example.org/x/eye"}]}, {"@id": "http://example.org/x/region", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/region"}, {"@id": "http://example.org/z/region"}]}, {"@id": "http://example.org/y/organ", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/x/organ"}]}, {"@id": "http://example.org/x/eyeball", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/eyeball"}]}, {"@id": "http://example.org/y/heart", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/heart"}, {"@id": "http://example.org/z/heart"}]}, {"@id": "http://example.org/y/region", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/region"}, {"@id": "http://example.org/z/region"}]}, {"@id": "http://example.org/z/hindlimb", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/hindlimb"}]}, {"@id": "http://example.org/x/heart", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/heart"}, {"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/y/heart"}]}, {"@id": "http://example.org/z/region", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/y/region"}, {"@id": "http://example.org/x/region"}]}, {"@id": "http://example.org/z/organ", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/lung"}, {"@id": "http://example.org/x/liver"}, {"@id": "http://example.org/y/organ"}, {"@id": "http://example.org/x/organ"}, {"@id": "http://example.org/x/heart"}]}, {"@id": "http://example.org/z/tissue", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/tissue"}, {"@id": "http://example.org/y/tissue"}]}, {"@id": "http://example.org/y/appendage", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/appendage"}, {"@id": "http://example.org/x/appendage"}]}, {"@id": "http://example.org/y/hand", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/x/hand"}, {"@id": "http://example.org/z/hand"}]}, {"@id": "http://example.org/x/lung", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/organ"}, {"@id": "http://example.org/y/lung"}, {"@id": "http://example.org/z/lung"}]}, {"@id": "http://example.org/y/tissue", "http://www.w3.org/2002/07/owl#equivalentClass": [{"@id": "http://example.org/z/tissue"}, {"@id": "http://example.org/x/tissue"}]}]
+{
+ "mapping_set_id": "https://w3id.org/sssom/mapping/tests/data/basic.tsv",
+ "license": "https://creativecommons.org/publicdomain/zero/1.0/",
+ "mappings": [
+ {
+ "subject_id": "a:something",
+ "predicate_id": "rdfs:subClassOf",
+ "object_id": "b:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "XXXXX",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "xxxxxx",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "a:example",
+ "object_source": "b:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.8,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "a:something",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "c:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "XYXYX",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "xyxyxy",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "a:example",
+ "object_source": "c:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.83,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "c:something",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "b:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "YXYXY",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "yxyxyx",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "c:example",
+ "object_source": "b:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.84,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "c:something",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "d:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "YYYYY",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "yyyyyy",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "c:example",
+ "object_source": "d:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.81,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "d:something",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "a:something",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "YYYYY",
+ "subject_category": "biolink:AnatomicalEntity",
+ "predicate_modifier": "Not",
+ "object_label": "yyyyyy",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "d:example",
+ "object_source": "a:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.82,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "xxxxx"
+ ],
+ "comment": "mock data"
+ },
+ {
+ "subject_id": "x:appendage",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:appendage",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "appendage",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "appendages",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label",
+ "skos:prefLabel"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "appendag"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:appendage",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:appendage",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "appendage",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "APPENDAGE",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.881856236,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "appendage"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:appendage",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:appendage",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "appendage",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "APPENDAGE",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.840714406,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "appendag"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:bone",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "bones",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0001474"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:bone",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "bones",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.764651037,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasRelatedSynonym"
+ ],
+ "match_string": [
+ "bone element"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:bone",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "bones",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.534601961,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "rdfs:label"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "y:bone",
+ "mapping_justification": "semapv:ManualMappingCuration",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_label": "bones",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "y:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.696730455,
+ "subject_match_field": [
+ "rdfs:label"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasRelatedSynonym"
+ ],
+ "match_string": [
+ "bone el"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_element",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.2,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_element",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.261203875,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_element",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.738796125,
+ "subject_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasDbXref"
+ ],
+ "match_string": [
+ "UBERON:0001474"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
+ "object_id": "z:bone_tissue",
+ "mapping_justification": "semapv:LexicalMatching",
+ "subject_label": "bone element",
+ "subject_category": "biolink:AnatomicalEntity",
+ "object_category": "biolink:AnatomicalEntity",
+ "subject_source": "x:example",
+ "object_source": "z:example",
+ "mapping_tool": "rdf_matcher",
+ "confidence": 0.2,
+ "subject_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "object_match_field": [
+ "oboInOwl:hasBroadSynonym"
+ ],
+ "match_string": [
+ "bone"
+ ],
+ "comment": "."
+ },
+ {
+ "subject_id": "x:bone_element",
+ "predicate_id": "owl:equivalentClass",
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+ "dcterms": "http://purl.org/dc/terms/",
+ "linkml": "https://w3id.org/linkml/",
+ "oboInOwl": "http://www.geneontology.org/formats/oboInOwl#",
+ "owl": "http://www.w3.org/2002/07/owl#",
+ "pav": "http://purl.org/pav/",
+ "prov": "http://www.w3.org/ns/prov#",
+ "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
+ "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+ "semapv": "https://w3id.org/semapv/vocab/",
+ "skos": "http://www.w3.org/2004/02/skos/core#",
+ "sssom": "https://w3id.org/sssom/",
+ "xsd": "http://www.w3.org/2001/XMLSchema#",
+ "@vocab": "https://w3id.org/sssom/",
+ "author_id": {
+ "@type": "rdfs:Resource",
+ "@id": "pav:authoredBy"
+ },
+ "comment": {
+ "@id": "rdfs:comment"
+ },
+ "confidence": {
+ "@type": "xsd:double"
+ },
+ "creator_id": {
+ "@type": "rdfs:Resource",
+ "@id": "dcterms:creator"
+ },
+ "curation_rule": {
+ "@type": "rdfs:Resource"
+ },
+ "curie_map": {
+ "@type": "@id"
+ },
+ "documentation": {
+ "@type": "@id"
+ },
+ "homepage": {
+ "@type": "@id"
+ },
+ "imports": {
+ "@type": "@id"
+ },
+ "issue_tracker": {
+ "@type": "@id"
+ },
+ "issue_tracker_item": {
+ "@type": "rdfs:Resource"
+ },
+ "last_updated": {
+ "@type": "xsd:date"
+ },
+ "license": {
+ "@type": "@id",
+ "@id": "dcterms:license"
+ },
+ "literal": {
+ "@id": "owl:annotatedTarget"
+ },
+ "literal_datatype": {
+ "@type": "@id",
+ "@id": "rdf:datatype"
+ },
+ "literal_preprocessing": {
+ "@type": "rdfs:Resource"
+ },
+ "literal_source": {
+ "@type": "rdfs:Resource"
+ },
+ "mapping_cardinality": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "mapping_date": {
+ "@type": "xsd:date",
+ "@id": "pav:authoredOn"
+ },
+ "mapping_justification": {
+ "@type": "rdfs:Resource"
+ },
+ "mapping_provider": {
+ "@type": "@id"
+ },
+ "mapping_registry_id": {
+ "@type": "rdfs:Resource"
+ },
+ "mapping_set_description": {
+ "@id": "dcterms:description"
+ },
+ "mapping_set_id": {
+ "@type": "@id"
+ },
+ "mapping_set_references": {
+ "@type": "@id"
+ },
+ "mapping_set_source": {
+ "@type": "@id",
+ "@id": "prov:wasDerivedFrom"
+ },
+ "mapping_set_title": {
+ "@id": "dcterms:title"
+ },
+ "mapping_set_version": {
+ "@id": "owl:versionInfo"
+ },
+ "mapping_source": {
+ "@type": "rdfs:Resource"
+ },
+ "mappings": {
+ "@type": "@id"
+ },
+ "mirror_from": {
+ "@type": "@id"
+ },
+ "object_id": {
+ "@type": "rdfs:Resource",
+ "@id": "owl:annotatedTarget"
+ },
+ "object_match_field": {
+ "@type": "rdfs:Resource"
+ },
+ "object_preprocessing": {
+ "@type": "rdfs:Resource"
+ },
+ "object_source": {
+ "@type": "rdfs:Resource"
+ },
+ "object_type": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "predicate_id": {
+ "@type": "rdfs:Resource",
+ "@id": "owl:annotatedProperty"
+ },
+ "predicate_modifier": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "predicate_type": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "prefix_url": {
+ "@type": "@id"
+ },
+ "publication_date": {
+ "@type": "xsd:date",
+ "@id": "dcterms:created"
+ },
+ "registry_confidence": {
+ "@type": "xsd:double"
+ },
+ "reviewer_id": {
+ "@type": "rdfs:Resource"
+ },
+ "see_also": {
+ "@id": "rdfs:seeAlso"
+ },
+ "semantic_similarity_score": {
+ "@type": "xsd:double"
+ },
+ "similarity_score": {
+ "@type": "xsd:double"
+ },
+ "subject_id": {
+ "@type": "rdfs:Resource",
+ "@id": "owl:annotatedSource"
+ },
+ "subject_match_field": {
+ "@type": "rdfs:Resource"
+ },
+ "subject_preprocessing": {
+ "@type": "rdfs:Resource"
+ },
+ "subject_source": {
+ "@type": "rdfs:Resource"
+ },
+ "subject_type": {
+ "@context": {
+ "@vocab": "@null",
+ "text": "skos:notation",
+ "description": "skos:prefLabel",
+ "meaning": "@id"
+ }
+ },
+ "LiteralMapping": {
+ "@id": "owl:Axiom"
+ },
+ "Mapping": {
+ "@id": "owl:Axiom"
+ },
+ "a": "http://example.org/a/",
+ "b": "http://example.org/b/",
+ "c": "http://example.org/c/",
+ "d": "http://example.org/d/",
+ "orcid": "https://orcid.org/",
+ "x": "http://example.org/x/",
+ "y": "http://example.org/y/",
+ "z": "http://example.org/z/"
+ }
+}
\ No newline at end of file
diff --git a/tests/validate_data/basic.tsv.owl b/tests/validate_data/basic.tsv.owl
index 0080d133..61df1b10 100644
--- a/tests/validate_data/basic.tsv.owl
+++ b/tests/validate_data/basic.tsv.owl
@@ -1,21 +1,31 @@
-@prefix : .
+@prefix a: .
+@prefix b: .
+@prefix c: .
+@prefix d: .
+@prefix dc1: .
+@prefix oboInOwl: .
+@prefix orcid: .
@prefix owl: .
+@prefix pav: .
@prefix rdfs: .
+@prefix semapv: .
+@prefix skos: .
@prefix sssom: .
@prefix x: .
+@prefix xsd: .
@prefix y: .
@prefix z: .
-sssom:comment a owl:AnnotationProperty .
+rdfs:comment a owl:AnnotationProperty .
sssom:confidence a owl:AnnotationProperty .
+sssom:mapping_justification a owl:AnnotationProperty .
+
sssom:mapping_tool a owl:AnnotationProperty .
sssom:match_string a owl:AnnotationProperty .
-sssom:mapping_justification a owl:AnnotationProperty .
-
sssom:object_category a owl:AnnotationProperty .
sssom:object_label a owl:AnnotationProperty .
@@ -24,6 +34,8 @@ sssom:object_match_field a owl:AnnotationProperty .
sssom:object_source a owl:AnnotationProperty .
+sssom:predicate_modifier a owl:AnnotationProperty .
+
sssom:subject_category a owl:AnnotationProperty .
sssom:subject_label a owl:AnnotationProperty .
@@ -32,12 +44,25 @@ sssom:subject_match_field a owl:AnnotationProperty .
sssom:subject_source a owl:AnnotationProperty .
+d:something a owl:Class ;
+ owl:equivalentClass a:something .
+
x:eyeball a owl:Class ;
owl:equivalentClass z:eyeball .
z:eyeball a owl:Class ;
owl:equivalentClass x:eyeball .
+a:something a owl:Class ;
+ rdfs:subClassOf b:something ;
+ owl:equivalentClass c:something .
+
+b:something a owl:Class .
+
+c:something a owl:Class ;
+ owl:equivalentClass b:something,
+ d:something .
+
x:hindlimb a owl:Class ;
owl:equivalentClass z:hindlimb .
@@ -196,2325 +221,2489 @@ x:bone_element a owl:Class ;
z:bone_element,
z:bone_tissue .
-[] a sssom:MappingSet ;
- sssom:comment "." ;
- sssom:creator_id ;
- sssom:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
- sssom:mapping_date "2020-05-30" ;
- sssom:mapping_tool "https://github.com/cmungall/rdf_matcher" ;
- sssom:mappings [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0010230" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "eyeball" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:eyeball ;
- owl:annotatedTarget x:eyeball ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0010230" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "eyeball" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:eyeball ;
- owl:annotatedTarget z:eyeball ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.5346019613807635"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone element" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bones" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:bone ;
- owl:annotatedTarget x:bone_element ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002107" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "livers" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "liver" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:liver ;
- owl:annotatedTarget y:liver ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002107" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "livers" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:liver ;
- owl:annotatedTarget z:liver ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "organs" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "organ" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:organ ;
- owl:annotatedTarget y:organ ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "heart" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "heart" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hearts" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:heart ;
- owl:annotatedTarget x:heart ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "appendag" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "APPENDAGE" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "appendages" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:appendage ;
- owl:annotatedTarget z:appendage ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8497788951776651"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "manus" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hand ;
- owl:annotatedTarget x:hand ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002048" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "lungs" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:lung ;
- owl:annotatedTarget y:lung ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002387" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "pes" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:foot ;
- owl:annotatedTarget z:foot ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000948" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "heart" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:heart ;
- owl:annotatedTarget z:heart ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone element" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:bone_element ;
- owl:annotatedTarget x:bone_element ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8818562360532485"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "REGION" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "region" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:region ;
- owl:annotatedTarget z:region ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2612038749637414"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone element" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget z:bone_element ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0001474" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone element" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget z:bone_element ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "appendag" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "appendage" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "APPENDAGE" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:appendage ;
- owl:annotatedTarget x:appendage ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.2612038749637414"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone tissue" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_tissue ;
- owl:annotatedTarget z:bone_tissue ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "REGION" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "regions" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:region ;
- owl:annotatedTarget z:region ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7646510369310004"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "bone element" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bones" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone element" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_element ;
- owl:annotatedTarget y:bone ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "tissu" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "TISSUE" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "tissues" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:tissue ;
- owl:annotatedTarget z:tissue ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0000948" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hearts" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:heart ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8407144059077161"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "heart" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hearts" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "heart" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:heart ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002398" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hands" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:hand ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "manus" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hand ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
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- sssom:match_string "UBERON:0002398" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "manus" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:hand ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002387" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "feet" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "pes" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:foot ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002398" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hands" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "manus" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:hand ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8"^^ ;
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- sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "manus" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:hand ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0002398" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "manus" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:hand ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "UBERON:0001474" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone element" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bones" ;
- sssom:subject_match_field ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:bone ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
- sssom:mapping_tool "rdf_matcher" ;
- sssom:match_string "BAD:ORGAN" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "ORGAN" ;
- sssom:object_match_field ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "liver" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:liver ;
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- [ a owl:Axiom ;
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- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bones" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
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- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
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- sssom:match_string "UBERON:0002387" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "feet" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:foot ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.7387961250362586"^^ ;
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- sssom:match_string "UBERON:0002107" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "liver" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:liver ;
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- [ a owl:Axiom ;
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- sssom:confidence "0.7387961250362586"^^ ;
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- sssom:match_string "UBERON:0000948" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "heart" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "" ;
- sssom:subject_match_field ;
- sssom:subject_source "z" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:heart ;
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- [ a owl:Axiom ;
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- sssom:confidence "0.8407144059077161"^^ ;
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- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
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- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
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- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
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- [ a owl:Axiom ;
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- sssom:confidence "0.8407144059077161"^^ ;
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- sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "ORGAN" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "organs" ;
- sssom:subject_match_field rdfs:label ;
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- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource y:organ ;
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- [ a owl:Axiom ;
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- sssom:match_string "tissu" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "tissues" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "tissue" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
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- [ a owl:Axiom ;
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- sssom:confidence "0.5346019613807635"^^ ;
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- sssom:match_string "bone" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bones" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "bone tissue" ;
- sssom:subject_match_field ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:bone_tissue ;
- owl:annotatedTarget y:bone ],
- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8212623907743639"^^ ;
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- sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "manus" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "hands" ;
- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "y" ;
- owl:annotatedProperty owl:equivalentClass ;
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- [ a owl:Axiom ;
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- sssom:confidence "0.8407144059077161"^^ ;
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- sssom:match_string "region" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
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- sssom:object_match_field rdfs:label ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "REGION" ;
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- owl:annotatedProperty owl:equivalentClass ;
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- [ a owl:Axiom ;
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- sssom:match_string "UBERON:0000948" ;
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- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "hearts" ;
- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
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- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource z:heart ;
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- [ a owl:Axiom ;
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- sssom:object_category "biolink:AnatomicalEntity" ;
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- owl:annotatedProperty owl:equivalentClass ;
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- [ a owl:Axiom ;
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- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "bone tissue" ;
- sssom:object_match_field ;
- sssom:object_source "x" ;
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- owl:annotatedProperty owl:equivalentClass ;
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- [ a owl:Axiom ;
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- sssom:object_category "biolink:AnatomicalEntity" ;
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- owl:annotatedProperty owl:equivalentClass ;
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- [ a owl:Axiom ;
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- sssom:object_category "biolink:AnatomicalEntity" ;
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- sssom:object_match_field ;
- sssom:object_source "y" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "heart" ;
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- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:heart ;
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- [ a owl:Axiom ;
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- sssom:match_string "organ" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "ORGAN" ;
- sssom:object_match_field rdfs:label ;
- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
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- sssom:subject_match_field rdfs:label ;
- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
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- [ a owl:Axiom ;
- sssom:comment "." ;
- sssom:confidence "0.8497788951776651"^^ ;
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- sssom:match_string "hand" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
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- sssom:object_source "z" ;
- sssom:subject_category "biolink:AnatomicalEntity" ;
- sssom:subject_label "manus" ;
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- sssom:subject_source "x" ;
- owl:annotatedProperty owl:equivalentClass ;
- owl:annotatedSource x:hand ;
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- [ a owl:Axiom ;
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- sssom:confidence "0.7387961250362586"^^ ;
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- sssom:match_string "BAD:ORGAN" ;
- sssom:mapping_justification "semapv:LexicalMatching" ;
- sssom:object_category "biolink:AnatomicalEntity" ;
- sssom:object_label "lung" ;
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- sssom:object_source "x" ;
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- owl:annotatedProperty owl:equivalentClass ;
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