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"sha256:c22b14cc4763c5a5b04134207736c107db42e9d3ef2d9779d465f5f1bcba572b"}, ] [package.extras] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -test = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] - -[extras] -dev = ["black", "isort", "pre-commit"] -docs = [] -tests = ["coverage", "pytest", "pytest-cov", "python-dotenv", "pyyaml"] +enabler = ["pytest-enabler (>=2.2)"] +test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"] +type = ["pytest-mypy"] [metadata] lock-version = "2.0" -python-versions = ">=3.9, <3.12.0" -content-hash = "65043e2c505a713c04614c1bb8d4078c1d8a67ee98e026777dda5ebe0e605eb7" +python-versions = ">=3.10, <3.12.0" +content-hash = "87fad84c4ccc43e8c08bc9d7d048fbe5e9de5e194751c2fb3acfd81b9f941a90" diff --git a/pyproject.toml b/pyproject.toml index 03fc4ee..4d7915c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,7 +13,7 @@ classifiers =[ "Operating System :: OS Independent"] [tool.poetry.dependencies] -python = ">=3.9, <3.12.0" +python = ">=3.10, <3.12.0" matplotlib = "^3.7.1" numpy = "^1.24.3" pandas = "^2.0.2" @@ -24,39 +24,33 @@ numba = "^0.57.0" noisereduce = "^2.0.1" scikit-learn = "^1.2.2" python-dateutil = "^2.8.2" -poetry = "^1.5.0" xarray = "2023.8.0" pyhydrophone = "^0.1.7" +netcdf4 = "^1.6.4" +syrupy = "^4.0.4" +#openpyxl = "^3.1.2" +#scikit-maad = "^1.4.0" +#setuptools = ">=68.1,<71.0" +#certifi = ">=2023.7.22,<2025.0.0" +#cryptography = ">=41.0.2,<43.0.0" +#dask = {version = "^2023.9.3", optional = true} +scikit-maad = "^1.4.3" +openpyxl = "^3.1.5" +pvlib = {version = "^0.11.0", optional = true} +dask = {version = "^2024.8.2", optional = true} -# Development tools +[tool.poetry.group.dev.dependencies] pre-commit = {version = "^3.3.1", optional = true} isort = {version = "^5.12.0", optional = true} black = {version = ">=23.3,<25.0", optional = true} -# Testing tools +[tool.poetry.group.test.dependencies] pyyaml = {version = "^6.0", optional = true} pytest = {version = "^7.3.1", optional = true} coverage = {version = "^7.2.5", optional = true} python-dotenv = {version = "^1.0.0", optional = true} pytest-cov = {version = "^4.1.0", optional = true} -# Documentation tools - -# Poetry has the dependecies groups, but those are not -# compatible with extras, widely used in the python-verse. -netcdf4 = "^1.6.4" -syrupy = "^4.0.4" -openpyxl = "^3.1.2" -scikit-maad = "^1.4.0" -setuptools = ">=68.1,<71.0" -certifi = ">=2023.7.22,<2025.0.0" -cryptography = ">=41.0.2,<43.0.0" -dask = {version = "^2023.9.3", optional = true} -[tool.poetry.extras] -dev = ["pre-commit", "isort", "black", "flake8"] -tests = ["pyyaml","pytest", "coverage", "python-dotenv", "pytest-cov"] -docs = ["sphinx"] - [tool.poetry.group.docs.dependencies] sphinx = "6.1.2" numpydoc = "^1.5.0" From a101ec58e074d4d6eeff04e595e544287db8cf2f Mon Sep 17 00:00:00 2001 From: Clea Parcerisas Date: Thu, 5 Sep 2024 12:37:03 +0200 Subject: [PATCH 2/9] changed the optional option for tests --- poetry.lock | 42 +++++++++++++++++++++--------------------- pyproject.toml | 16 ++++++++-------- 2 files changed, 29 insertions(+), 29 deletions(-) diff --git a/poetry.lock b/poetry.lock index a17c325..a256662 100644 --- a/poetry.lock +++ b/poetry.lock @@ -43,7 +43,7 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] name = "black" version = "24.8.0" description = "The uncompromising code formatter." -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "black-24.8.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:09cdeb74d494ec023ded657f7092ba518e8cf78fa8386155e4a03fdcc44679e6"}, @@ -179,7 +179,7 @@ pycparser = "*" name = "cfgv" version = "3.4.0" description = "Validate configuration and produce human readable error messages." -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "cfgv-3.4.0-py2.py3-none-any.whl", hash = "sha256:b7265b1f29fd3316bfcd2b330d63d024f2bfd8bcb8b0272f8e19a504856c48f9"}, @@ -331,7 +331,7 @@ files = [ name = "click" version = "8.1.7" description = "Composable command line interface toolkit" -optional = true +optional = false python-versions = ">=3.7" files = [ {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"}, @@ -593,7 +593,7 @@ files = [ name = "distlib" version = "0.3.8" description = "Distribution utilities" -optional = true +optional = false python-versions = "*" files = [ {file = "distlib-0.3.8-py2.py3-none-any.whl", hash = "sha256:034db59a0b96f8ca18035f36290806a9a6e6bd9d1ff91e45a7f172eb17e51784"}, @@ -640,7 +640,7 @@ test = ["pytest (>=6)"] name = "filelock" version = "3.15.4" description = "A platform independent file lock." -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "filelock-3.15.4-py3-none-any.whl", hash = "sha256:6ca1fffae96225dab4c6eaf1c4f4f28cd2568d3ec2a44e15a08520504de468e7"}, @@ -793,7 +793,7 @@ numpy = ">=1.17.3" name = "identify" version = "2.6.0" description = "File identification library for Python" -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "identify-2.6.0-py2.py3-none-any.whl", hash = "sha256:e79ae4406387a9d300332b5fd366d8994f1525e8414984e1a59e058b2eda2dd0"}, @@ -892,7 +892,7 @@ files = [ name = "isort" version = "5.13.2" description = "A Python utility / library to sort Python imports." -optional = true +optional = false python-versions = ">=3.8.0" files = [ {file = "isort-5.13.2-py3-none-any.whl", hash = "sha256:8ca5e72a8d85860d5a3fa69b8745237f2939afe12dbf656afbcb47fe72d947a6"}, @@ -1348,7 +1348,7 @@ files = [ name = "mypy-extensions" version = "1.0.0" description = "Type system extensions for programs checked with the mypy type checker." -optional = true +optional = false python-versions = ">=3.5" files = [ {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"}, @@ -1399,27 +1399,27 @@ tests = ["Cython", "packaging", "pytest"] [[package]] name = "networkx" -version = "3.2.1" +version = "3.3" description = "Python package for creating and manipulating graphs and networks" optional = false -python-versions = ">=3.9" +python-versions = ">=3.10" files = [ - {file = "networkx-3.2.1-py3-none-any.whl", hash = "sha256:f18c69adc97877c42332c170849c96cefa91881c99a7cb3e95b7c659ebdc1ec2"}, - {file = "networkx-3.2.1.tar.gz", hash = "sha256:9f1bb5cf3409bf324e0a722c20bdb4c20ee39bf1c30ce8ae499c8502b0b5e0c6"}, + {file = "networkx-3.3-py3-none-any.whl", hash = "sha256:28575580c6ebdaf4505b22c6256a2b9de86b316dc63ba9e93abde3d78dfdbcf2"}, + {file = "networkx-3.3.tar.gz", hash = "sha256:0c127d8b2f4865f59ae9cb8aafcd60b5c70f3241ebd66f7defad7c4ab90126c9"}, ] [package.extras] -default = ["matplotlib (>=3.5)", "numpy (>=1.22)", "pandas (>=1.4)", "scipy (>=1.9,!=1.11.0,!=1.11.1)"] -developer = ["changelist (==0.4)", "mypy (>=1.1)", "pre-commit (>=3.2)", "rtoml"] -doc = ["nb2plots (>=0.7)", "nbconvert (<7.9)", "numpydoc (>=1.6)", "pillow (>=9.4)", "pydata-sphinx-theme (>=0.14)", "sphinx (>=7)", "sphinx-gallery (>=0.14)", "texext (>=0.6.7)"] -extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.11)", "sympy (>=1.10)"] +default = ["matplotlib (>=3.6)", "numpy (>=1.23)", "pandas (>=1.4)", "scipy (>=1.9,!=1.11.0,!=1.11.1)"] +developer = ["changelist (==0.5)", "mypy (>=1.1)", "pre-commit (>=3.2)", "rtoml"] +doc = ["myst-nb (>=1.0)", "numpydoc (>=1.7)", "pillow (>=9.4)", "pydata-sphinx-theme (>=0.14)", "sphinx (>=7)", "sphinx-gallery (>=0.14)", "texext (>=0.6.7)"] +extra = ["lxml (>=4.6)", "pydot (>=2.0)", "pygraphviz (>=1.12)", "sympy (>=1.10)"] test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"] [[package]] name = "nodeenv" version = "1.9.1" description = "Node.js virtual environment builder" -optional = true +optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ {file = "nodeenv-1.9.1-py2.py3-none-any.whl", hash = "sha256:ba11c9782d29c27c70ffbdda2d7415098754709be8a7056d79a737cd901155c9"}, @@ -1661,7 +1661,7 @@ complete = ["blosc", "numpy (>=1.20.0)", "pandas (>=1.3)", "pyzmq"] name = "pathspec" version = "0.12.1" description = "Utility library for gitignore style pattern matching of file paths." -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"}, @@ -1821,7 +1821,7 @@ xxhash = ["xxhash (>=1.4.3)"] name = "pre-commit" version = "3.8.0" description = "A framework for managing and maintaining multi-language pre-commit hooks." -optional = true +optional = false python-versions = ">=3.9" files = [ {file = "pre_commit-3.8.0-py2.py3-none-any.whl", hash = "sha256:9a90a53bf82fdd8778d58085faf8d83df56e40dfe18f45b19446e26bf1b3a63f"}, @@ -2681,7 +2681,7 @@ zstd = ["zstandard (>=0.18.0)"] name = "virtualenv" version = "20.26.3" description = "Virtual Python Environment builder" -optional = true +optional = false python-versions = ">=3.7" files = [ {file = "virtualenv-20.26.3-py3-none-any.whl", hash = "sha256:8cc4a31139e796e9a7de2cd5cf2489de1217193116a8fd42328f1bd65f434589"}, @@ -2743,4 +2743,4 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.0" python-versions = ">=3.10, <3.12.0" -content-hash = "87fad84c4ccc43e8c08bc9d7d048fbe5e9de5e194751c2fb3acfd81b9f941a90" +content-hash = "16d8e5051710ff5a7d29d96191e03557fa8c18b835918b0a200b0d7c5fce5ac8" diff --git a/pyproject.toml b/pyproject.toml index 4d7915c..9f22ed2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -40,16 +40,16 @@ pvlib = {version = "^0.11.0", optional = true} dask = {version = "^2024.8.2", optional = true} [tool.poetry.group.dev.dependencies] -pre-commit = {version = "^3.3.1", optional = true} -isort = {version = "^5.12.0", optional = true} -black = {version = ">=23.3,<25.0", optional = true} +pre-commit = "^3.3.1" +isort = "^5.12.0" +black = ">=23.3,<25.0" [tool.poetry.group.test.dependencies] -pyyaml = {version = "^6.0", optional = true} -pytest = {version = "^7.3.1", optional = true} -coverage = {version = "^7.2.5", optional = true} -python-dotenv = {version = "^1.0.0", optional = true} -pytest-cov = {version = "^4.1.0", optional = true} +pyyaml = "^6.0" +pytest = "^7.3.1" +coverage = "^7.2.5" +python-dotenv = "^1.0.0" +pytest-cov = "^4.1.0" [tool.poetry.group.docs.dependencies] sphinx = "6.1.2" From c0a59ba088ef50db9e6bdd40fdd367a875dd5d21 Mon Sep 17 00:00:00 2001 From: Clea Parcerisas Date: Thu, 5 Sep 2024 12:39:16 +0200 Subject: [PATCH 3/9] removed support for python 3.9 --- .github/workflows/ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 98e91af..80f6ce0 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -12,7 +12,7 @@ jobs: strategy: fail-fast: false matrix: - python-versions: ["3.9", "3.10", "3.11"] + python-versions: ["3.10", "3.11"] os: [ ubuntu-20.04 ] runs-on: ${{ matrix.os }} From 7ff429918cad2e41ddfed0c97365dc44dc345c7f Mon Sep 17 00:00:00 2001 From: Clea Parcerisas Date: Thu, 5 Sep 2024 14:06:52 +0200 Subject: [PATCH 4/9] cleaning up pyproject.toml and ci to speed up tests --- .github/workflows/ci.yml | 5 +-- Makefile | 3 ++ poetry.lock | 70 +++++++++++++++++++++++++++------------- pyproject.toml | 12 ++----- 4 files changed, 54 insertions(+), 36 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 80f6ce0..bd78575 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -21,14 +21,11 @@ jobs: - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-versions }} - - name: Install dependencies run: | sudo apt-get install libsndfile1 - make init-dev - + make init-test - name: Run unit tests run: | - export POETRY_PYPAM_TEST_NO_PLOTS=make test PYPAM_TEST_NO_PLOTS= make test diff --git a/Makefile b/Makefile index dbc895f..d6dabd5 100644 --- a/Makefile +++ b/Makefile @@ -25,6 +25,9 @@ init: startup init-dev: startup poetry install --extras 'tests' --extras 'dev' --extras 'docs' +init-test: startup + poetry install --with 'tests' + init-docs: startup poetry install --extras 'docs' diff --git a/poetry.lock b/poetry.lock index a256662..a234ca1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -551,31 +551,31 @@ tests = ["pytest", "pytest-cov", "pytest-xdist"] [[package]] name = "dask" -version = "2024.8.2" +version = "2023.12.1" description = "Parallel PyData with Task Scheduling" optional = true -python-versions = ">=3.10" +python-versions = ">=3.9" files = [ - {file = "dask-2024.8.2-py3-none-any.whl", hash = "sha256:484c317ee870140dbeccc759a91fd98821bba98d71a43eda7856fc9e859b03a1"}, - {file = "dask-2024.8.2.tar.gz", hash = "sha256:1d05e09166ac7927a54401e998aa1599e86aac666edbdaeb3096bf4b957029e0"}, + {file = "dask-2023.12.1-py3-none-any.whl", hash = "sha256:55f316f32da9e68fe995e2c0dc460cb8888cd4a1af32096753788e8af45a8d10"}, + {file = "dask-2023.12.1.tar.gz", hash = "sha256:0ac3acd5bdbfacb5ad6401ac7663a1135955b3fa051a118e1b8a88e87b6b44a2"}, ] [package.dependencies] click = ">=8.1" -cloudpickle = ">=3.0.0" +cloudpickle = ">=1.5.0" fsspec = ">=2021.09.0" -importlib-metadata = {version = ">=4.13.0", markers = "python_version < \"3.12\""} +importlib-metadata = ">=4.13.0" packaging = ">=20.0" -partd = ">=1.4.0" +partd = ">=1.2.0" pyyaml = ">=5.3.1" toolz = ">=0.10.0" [package.extras] -array = ["numpy (>=1.24)"] -complete = ["dask[array,dataframe,diagnostics,distributed]", "lz4 (>=4.3.2)", "pyarrow (>=14.0.1)"] -dataframe = ["dask-expr (>=1.1,<1.2)", "dask[array]", "pandas (>=2.0)"] +array = ["numpy (>=1.21)"] +complete = ["dask[array,dataframe,diagnostics,distributed]", "lz4 (>=4.3.2)", "pyarrow (>=7.0)", "pyarrow-hotfix"] +dataframe = ["dask[array]", "pandas (>=1.3)"] diagnostics = ["bokeh (>=2.4.2)", "jinja2 (>=2.10.3)"] -distributed = ["distributed (==2024.8.2)"] +distributed = ["distributed (==2023.12.1)"] test = ["pandas[test]", "pre-commit", "pytest", "pytest-cov", "pytest-rerunfailures", "pytest-timeout", "pytest-xdist"] [[package]] @@ -862,7 +862,7 @@ files = [ name = "importlib-metadata" version = "8.4.0" description = "Read metadata from Python packages" -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "importlib_metadata-8.4.0-py3-none-any.whl", hash = "sha256:66f342cc6ac9818fc6ff340576acd24d65ba0b3efabb2b4ac08b598965a4a2f1"}, @@ -877,6 +877,28 @@ doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linke perf = ["ipython"] test = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-perf (>=0.9.2)", "pytest-ruff (>=0.2.1)"] +[[package]] +name = "importlib-resources" +version = "6.4.4" +description = "Read resources from Python packages" +optional = false +python-versions = ">=3.8" +files = [ + {file = "importlib_resources-6.4.4-py3-none-any.whl", hash = "sha256:dda242603d1c9cd836c3368b1174ed74cb4049ecd209e7a1a0104620c18c5c11"}, + {file = "importlib_resources-6.4.4.tar.gz", hash = "sha256:20600c8b7361938dc0bb2d5ec0297802e575df486f5a544fa414da65e13721f7"}, +] + +[package.dependencies] +zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} + +[package.extras] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +cover = ["pytest-cov"] +doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +enabler = ["pytest-enabler (>=2.2)"] +test = ["jaraco.test (>=5.4)", "pytest (>=6,!=8.1.*)", "zipp (>=3.17)"] +type = ["pytest-mypy"] + [[package]] name = "iniconfig" version = "2.0.0" @@ -1269,6 +1291,7 @@ files = [ contourpy = ">=1.0.1" cycler = ">=0.10" fonttools = ">=4.22.0" +importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""} kiwisolver = ">=1.3.1" numpy = ">=1.23" packaging = ">=20.0" @@ -1399,20 +1422,20 @@ tests = ["Cython", "packaging", "pytest"] [[package]] name = "networkx" -version = "3.3" +version = "3.2.1" description = "Python package for creating and manipulating graphs and networks" optional = false -python-versions = ">=3.10" +python-versions = ">=3.9" files = [ - {file = "networkx-3.3-py3-none-any.whl", hash = "sha256:28575580c6ebdaf4505b22c6256a2b9de86b316dc63ba9e93abde3d78dfdbcf2"}, - {file = "networkx-3.3.tar.gz", hash = "sha256:0c127d8b2f4865f59ae9cb8aafcd60b5c70f3241ebd66f7defad7c4ab90126c9"}, + {file = "networkx-3.2.1-py3-none-any.whl", hash = "sha256:f18c69adc97877c42332c170849c96cefa91881c99a7cb3e95b7c659ebdc1ec2"}, + {file = "networkx-3.2.1.tar.gz", hash = "sha256:9f1bb5cf3409bf324e0a722c20bdb4c20ee39bf1c30ce8ae499c8502b0b5e0c6"}, ] [package.extras] -default = ["matplotlib (>=3.6)", "numpy (>=1.23)", "pandas (>=1.4)", "scipy (>=1.9,!=1.11.0,!=1.11.1)"] -developer = ["changelist (==0.5)", "mypy (>=1.1)", "pre-commit (>=3.2)", "rtoml"] -doc = ["myst-nb (>=1.0)", "numpydoc (>=1.7)", "pillow (>=9.4)", "pydata-sphinx-theme (>=0.14)", "sphinx (>=7)", "sphinx-gallery (>=0.14)", "texext (>=0.6.7)"] -extra = ["lxml (>=4.6)", "pydot (>=2.0)", "pygraphviz (>=1.12)", "sympy (>=1.10)"] +default = ["matplotlib (>=3.5)", "numpy (>=1.22)", "pandas (>=1.4)", "scipy (>=1.9,!=1.11.0,!=1.11.1)"] +developer = ["changelist (==0.4)", "mypy (>=1.1)", "pre-commit (>=3.2)", "rtoml"] +doc = ["nb2plots (>=0.7)", "nbconvert (<7.9)", "numpydoc (>=1.6)", "pillow (>=9.4)", "pydata-sphinx-theme (>=0.14)", "sphinx (>=7)", "sphinx-gallery (>=0.14)", "texext (>=0.6.7)"] +extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.11)", "sympy (>=1.10)"] test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"] [[package]] @@ -2377,6 +2400,7 @@ babel = ">=2.9" colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""} docutils = ">=0.18,<0.20" imagesize = ">=1.3" +importlib-metadata = {version = ">=4.8", markers = "python_version < \"3.10\""} Jinja2 = ">=3.0" packaging = ">=21.0" Pygments = ">=2.13" @@ -2725,7 +2749,7 @@ viz = ["matplotlib", "nc-time-axis", "seaborn"] name = "zipp" version = "3.20.1" description = "Backport of pathlib-compatible object wrapper for zip files" -optional = true +optional = false python-versions = ">=3.8" files = [ {file = "zipp-3.20.1-py3-none-any.whl", hash = "sha256:9960cd8967c8f85a56f920d5d507274e74f9ff813a0ab8889a5b5be2daf44064"}, @@ -2742,5 +2766,5 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.0" -python-versions = ">=3.10, <3.12.0" -content-hash = "16d8e5051710ff5a7d29d96191e03557fa8c18b835918b0a200b0d7c5fce5ac8" +python-versions = ">=3.9, <3.12.0" +content-hash = "3a67b2f80bac2872de648673771f1aa6b305ff98d53b8272e97d44c49b1d45c9" diff --git a/pyproject.toml b/pyproject.toml index 9f22ed2..fbabc37 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -13,7 +13,7 @@ classifiers =[ "Operating System :: OS Independent"] [tool.poetry.dependencies] -python = ">=3.10, <3.12.0" +python = ">=3.9, <3.12.0" matplotlib = "^3.7.1" numpy = "^1.24.3" pandas = "^2.0.2" @@ -28,23 +28,17 @@ xarray = "2023.8.0" pyhydrophone = "^0.1.7" netcdf4 = "^1.6.4" syrupy = "^4.0.4" -#openpyxl = "^3.1.2" -#scikit-maad = "^1.4.0" -#setuptools = ">=68.1,<71.0" -#certifi = ">=2023.7.22,<2025.0.0" -#cryptography = ">=41.0.2,<43.0.0" -#dask = {version = "^2023.9.3", optional = true} scikit-maad = "^1.4.3" openpyxl = "^3.1.5" pvlib = {version = "^0.11.0", optional = true} -dask = {version = "^2024.8.2", optional = true} +dask = {version = "^2023.0.0", optional = true} [tool.poetry.group.dev.dependencies] pre-commit = "^3.3.1" isort = "^5.12.0" black = ">=23.3,<25.0" -[tool.poetry.group.test.dependencies] +[tool.poetry.group.tests.dependencies] pyyaml = "^6.0" pytest = "^7.3.1" coverage = "^7.2.5" From 123e7678f434263afa738f4f71c8ba1040a54841 Mon Sep 17 00:00:00 2001 From: Clea Parcerisas Date: Thu, 5 Sep 2024 14:09:11 +0200 Subject: [PATCH 5/9] removed quotations from tests in makefile --- Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Makefile b/Makefile index d6dabd5..7748ac2 100644 --- a/Makefile +++ b/Makefile @@ -26,7 +26,7 @@ init-dev: startup poetry install --extras 'tests' --extras 'dev' --extras 'docs' init-test: startup - poetry install --with 'tests' + poetry install --with tests init-docs: startup poetry install --extras 'docs' From 545e8533483e6ad7b720c090f6f2a7364a6c6e7e Mon Sep 17 00:00:00 2001 From: Clea Parcerisas Date: Thu, 5 Sep 2024 14:11:04 +0200 Subject: [PATCH 6/9] removed install the library libsndfile1 in ci --- .github/workflows/ci.yml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index bd78575..3539cef 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -12,7 +12,7 @@ jobs: strategy: fail-fast: false matrix: - python-versions: ["3.10", "3.11"] + python-versions: ["3.9", "3.10", "3.11"] os: [ ubuntu-20.04 ] runs-on: ${{ matrix.os }} @@ -22,8 +22,7 @@ jobs: with: python-version: ${{ matrix.python-versions }} - name: Install dependencies - run: | - sudo apt-get install libsndfile1 + run: | make init-test - name: Run unit tests From 5890a1deb739ee2473d65ffebee9481990c2e62e Mon Sep 17 00:00:00 2001 From: Clea Parcerisas Date: Thu, 5 Sep 2024 14:14:10 +0200 Subject: [PATCH 7/9] added again the extra dependencies list --- .github/workflows/ci.yml | 2 +- Makefile | 3 --- pyproject.toml | 5 +++++ 3 files changed, 6 insertions(+), 4 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 3539cef..91a1ecc 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -23,7 +23,7 @@ jobs: python-version: ${{ matrix.python-versions }} - name: Install dependencies run: | - make init-test + make init-dev - name: Run unit tests run: | diff --git a/Makefile b/Makefile index 7748ac2..dbc895f 100644 --- a/Makefile +++ b/Makefile @@ -25,9 +25,6 @@ init: startup init-dev: startup poetry install --extras 'tests' --extras 'dev' --extras 'docs' -init-test: startup - poetry install --with tests - init-docs: startup poetry install --extras 'docs' diff --git a/pyproject.toml b/pyproject.toml index fbabc37..aebed4a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -33,6 +33,11 @@ openpyxl = "^3.1.5" pvlib = {version = "^0.11.0", optional = true} dask = {version = "^2023.0.0", optional = true} +[tool.poetry.extras] +dev = ["pre-commit", "isort", "black", "flake8"] +tests = ["pyyaml","pytest", "coverage", "python-dotenv", "pytest-cov"] +docs = ["sphinx"] + [tool.poetry.group.dev.dependencies] pre-commit = "^3.3.1" isort = "^5.12.0" From 8cdac50251dd2960b59dbab19b9b329f5847358e Mon Sep 17 00:00:00 2001 From: Clea Parcerisas Date: Thu, 5 Sep 2024 14:15:58 +0200 Subject: [PATCH 8/9] changed make file and ci to not install the docs when testing for speeding up --- .github/workflows/ci.yml | 2 +- Makefile | 3 +++ poetry.lock | 7 ++++++- 3 files changed, 10 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 91a1ecc..54b7cd7 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -23,7 +23,7 @@ jobs: python-version: ${{ matrix.python-versions }} - name: Install dependencies run: | - make init-dev + make init-tests - name: Run unit tests run: | diff --git a/Makefile b/Makefile index dbc895f..b5a5373 100644 --- a/Makefile +++ b/Makefile @@ -25,6 +25,9 @@ init: startup init-dev: startup poetry install --extras 'tests' --extras 'dev' --extras 'docs' +init-tests: startup + poetry install --extras 'tests' --extras 'dev' + init-docs: startup poetry install --extras 'docs' diff --git a/poetry.lock b/poetry.lock index a234ca1..7497143 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2764,7 +2764,12 @@ enabler = ["pytest-enabler (>=2.2)"] test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"] type = ["pytest-mypy"] +[extras] +dev = [] +docs = [] +tests = [] + [metadata] lock-version = "2.0" python-versions = ">=3.9, <3.12.0" -content-hash = "3a67b2f80bac2872de648673771f1aa6b305ff98d53b8272e97d44c49b1d45c9" +content-hash = "8c0f2745064eea4829096e631d59d6052e13845304b146ef0b3d7a351eeaa74f" From 655d8da432eb5d7c516eeb9b262fae58e94ecf69 Mon Sep 17 00:00:00 2001 From: Clea Parcerisas Date: Thu, 5 Sep 2024 14:55:10 +0200 Subject: [PATCH 9/9] removing the extras group on pyproject.toml --- .github/workflows/ci.yml | 2 +- Makefile | 8 ++++---- poetry.lock | 7 +------ pyproject.toml | 7 +------ 4 files changed, 7 insertions(+), 17 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 54b7cd7..3539cef 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -23,7 +23,7 @@ jobs: python-version: ${{ matrix.python-versions }} - name: Install dependencies run: | - make init-tests + make init-test - name: Run unit tests run: | diff --git a/Makefile b/Makefile index b5a5373..a0970a1 100644 --- a/Makefile +++ b/Makefile @@ -23,13 +23,13 @@ init: startup poetry install init-dev: startup - poetry install --extras 'tests' --extras 'dev' --extras 'docs' + poetry install --with test, docs, dev -init-tests: startup - poetry install --extras 'tests' --extras 'dev' +init-test: startup + poetry install --with test init-docs: startup - poetry install --extras 'docs' + poetry install --with docs docs: if ! [ -d "./docs" ]; then poetry run sphinx-quickstart -q --ext-autodoc --sep --project $(PROJECT) --author $(AUTHOR) docs; fi diff --git a/poetry.lock b/poetry.lock index 7497143..55865e0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2764,12 +2764,7 @@ enabler = ["pytest-enabler (>=2.2)"] test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"] type = ["pytest-mypy"] -[extras] -dev = [] -docs = [] -tests = [] - [metadata] lock-version = "2.0" python-versions = ">=3.9, <3.12.0" -content-hash = "8c0f2745064eea4829096e631d59d6052e13845304b146ef0b3d7a351eeaa74f" +content-hash = "860821e457a08d11051385509d5e0dcc34bffd2ad7bdb7d0d9a7ac367b168db6" diff --git a/pyproject.toml b/pyproject.toml index aebed4a..5a9623c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -33,17 +33,12 @@ openpyxl = "^3.1.5" pvlib = {version = "^0.11.0", optional = true} dask = {version = "^2023.0.0", optional = true} -[tool.poetry.extras] -dev = ["pre-commit", "isort", "black", "flake8"] -tests = ["pyyaml","pytest", "coverage", "python-dotenv", "pytest-cov"] -docs = ["sphinx"] - [tool.poetry.group.dev.dependencies] pre-commit = "^3.3.1" isort = "^5.12.0" black = ">=23.3,<25.0" -[tool.poetry.group.tests.dependencies] +[tool.poetry.group.test.dependencies] pyyaml = "^6.0" pytest = "^7.3.1" coverage = "^7.2.5"