Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add ims reader to ashlar #162

Open
ciszew opened this issue Nov 15, 2022 · 1 comment
Open

Add ims reader to ashlar #162

ciszew opened this issue Nov 15, 2022 · 1 comment

Comments

@ciszew
Copy link

ciszew commented Nov 15, 2022

We are using Ashlar to stitch and register cyclical images obtained from Dragonfly spinning disc confocal (by Andor). Ashlar works great but it cannot ready .ims files directly (we are using fileseries option, ims is default and only option for direct output from dragonfly) so we have to go through file conversion step (using bf convert or python to get ome-tiff or tiff files).
I was wondering if it would be possible to add .ims files option to Ashlar reader? It would save us bunch of processing time and data duplication.

@jmuhlich
Copy link
Collaborator

jmuhlich commented Dec 5, 2022

Glad to hear it's working well for you! Yes, we are working on this -- we had another request for .ims support as well already. We will add full Bioformats support to the fileseries reader so any supported format can be read this way.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants