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While all PBTA-related studies have had their gene models updated, a request has come though to add additional fields from OpenPedCan v12 to the data clinical tables. This ticket describes what fields to ensure are included: #42. Everything from pathology_free_text down is likely what is missing. Also need to add EFS status - this can be found in EFS_event_type from histologies, with guidance:
remove "Not Reported", then NA==0 and all others means == 1
Next, all KF studies need the same fields incorporated from openpedcan above (IF the study is in OpenPedCan) and updated. A ticket summarizing studies to load is here: https://github.com/d3b-center/bixu-tracker/issues/1751. Note that x01_fy16_nbl_maris is blocked by needing clarification from collaborators on which samples to hide (will be taken care of upstream) and Teachey is a new study to be created and loaded.
The text was updated successfully, but these errors were encountered:
While all PBTA-related studies have had their gene models updated, a request has come though to add additional fields from OpenPedCan v12 to the data clinical tables. This ticket describes what fields to ensure are included: #42. Everything from
pathology_free_text
down is likely what is missing. Also need to add EFS status - this can be found inEFS_event_type
from histologies, with guidance:Next, all KF studies need the same fields incorporated from openpedcan above (IF the study is in OpenPedCan) and updated. A ticket summarizing studies to load is here: https://github.com/d3b-center/bixu-tracker/issues/1751. Note that
x01_fy16_nbl_maris
is blocked by needing clarification from collaborators on which samples to hide (will be taken care of upstream) andTeachey
is a new study to be created and loaded.The text was updated successfully, but these errors were encountered: