No well-defined / no consistent sources of clinical data

[pieterlukasse]

We are missing well-defined/consistent sources of clinical data. IT's sort of figured out for PBTA versus kids first, but outside source like U Penn have their data it seems shared with openpedcan....maybe a system to use their histologies file/table?

Priority:

Desired solution:

Preferred or recommended technical approach:

• Allison: have all data go through the DW / DBT system

DoD:

Questions

• I think we need more details here... can we map/diagram the PBTA vs U Penn process for example?
• Is this related to itemId=26122397? No, not really

[pieterlukasse]

Adding the datasets overview sheet we made to get a complete picture of all the data going into cBioPortal today: https://docs.google.com/spreadsheets/d/190C4X90-dgmv7jhdATbdcyUwMjNrZlw4bxWsaN-yBwM/edit#gid=0

The initial list was made by getting it from the PedCbioPortal datasets page.

[pieterlukasse]

update: tomorrow there will be a "department retreat" to discuss (near) future reorganization of the database/Datawarehouse. This will potentially provide solutions for this issue.