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deploy.xml
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deploy.xml
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<?xml version ="1.0"?>
<!--Ant Script for create Build for caTissue Suite-->
<project name="caTissue Suite v1.2 Installation" default="deploy_app">
<!--define require dir and Properties -->
<taskdef resource="net/sf/antcontrib/antcontrib.properties">
<classpath>
<pathelement location="./lib/ant-contrib.jar" />
</classpath>
</taskdef>
<property environment="env" />
<import file="build-properties.xml"/>
<property name="base.dir" value="." />
<property name="mail.file.dir" value="${base.dir}" />
<property name="temp.dir" value="./deploytempCatissuecore" />
<property name="camodel.dir" value="${base.dir}/ca_model" />
<property name="csm.dir" value="${temp.dir}/tempcsm" />
<property name="lib.dir" value="${base.dir}/lib" />
<property name="mysql.sql.dir" value="${base.dir}/SQL/MySql" />
<property name="dbupgrade.sql.dir" value="${base.dir}/SQL/DBUpgrade" />
<property name="oracle.sql.dir" value="${base.dir}/SQL/Oracle" />
<property name="common.sql.dir" value="${base.dir}/SQL/Common" />
<property name="mssqlserver.sql.dir" value="${base.dir}/SQL/MsSqlServer" />
<property name="oracle.dialect.string" value="org.hibernate.dialect.Oracle9Dialect" />
<property name="mysql.dialect.string" value="edu.wustl.catissuecore.hibernate.dialect.MySqlCustomDialect" />
<property name="catissue.datasource" value="java:/catissuecore" />
<property name="dynamicextensions.datasource" value="java:/dynamicextensions" />
<property name="oracle.dialect.h3.string" value="org.hibernate.dialect.Oracle9Dialect" />
<property name="mysql.dialect.h3.string" value="org.hibernate.dialect.MySqlCustomDialect" />
<property name="mssqlserver.dialect.string" value="org.hibernate.dialect.SQLServerDialect" />
<property name="oracle.driver.string" value="oracle.jdbc.driver.OracleDriver" />
<property name="mysql.driver.string" value="org.gjt.mm.mysql.Driver" />
<property name="mssqlserver.driver.string" value="com.microsoft.sqlserver.jdbc.SQLServerDriver" />
<!-- Added for eMPI integration -->
<property name="db2.driver.string" value="com.ibm.db2.jcc.DB2Driver" />
<!-- end -->
<property name="mysql.lib" value="mysql-connector-java-5.0.8-bin.jar" />
<property name="oracle.lib" value="ojdbc14.jar" />
<property name="mssqlserver.lib" value="sqljdbc.jar" />
<property name="catissue.struts.config.file" value="struts-config.xml" />
<property name="catissue.hibernate.config.file" value="hibernate.cfg.xml" />
<property name="catissue.tiles.def.file" value="tiles-defs.xml" />
<property name="oracle_home" value="${env.ORACLE_HOME}"/>
<property name="jboss.bin.run.jar" value="${rel.jboss.home}/bin/run.jar"/>
<property name="env.COMPUTERNAME" value="${env.HOSTNAME}"/>
<property name="mysql.dao.prop.filename" value="MySQLDAOProperties.xml" />
<property name="oracle.dao.prop.filename" value="OracleDAOProperties.xml" />
<property name="oracle.dao.datasource.prop.filename" value="OracleDataSourceDAOProperties.xml"/>
<property name="mysql.dao.datasource.prop.filename" value="MysqlDataSourceDAOProperties.xml"/>
<var name="databaseurl" value="" />
<import file="DEDeploy.xml" />
<property name="tempcacore.dir" value="${base.dir}/temp_deaudit_related_files" />
<property name="export.dir" value="${tempcacore.dir}/temp_exported_xmi" />
<!-- property name="cacaore.deployables" value="${cacore.deployable.location}" /-->
<property name="dashboard.csv.dir" value="${base.dir}/insert_dashboard_queries" />
<if>
<equals arg1="mysql" arg2="${database.type}" />
<then>
<property name="dashboard.parameters.csv.file" value="dashboard_sqls_mysql.csv" />
</then>
<elseif>
<equals arg1="oracle" arg2="${database.type}" />
<then>
<property name="dashboard.parameters.csv.file" value="dashboard_sqls_oracle.csv" />
</then>
</elseif>
</if>
<property name="custom-report.script.dir" value="${rel.jboss.home}/server/default/custom-reports/scripts" />
<property name="custom-report.report.dir" value="${rel.jboss.home}/server/default/custom-reports/reports" />
<property name="csm.database.type" value="${database.type}"/>
<property name="csm.database.host" value="${database.host}"/>
<property name="csm.database.port" value="${database.port}"/>
<property name="csm.database.name" value="${database.name}"/>
<property name="csm.database.username" value="${database.username}"/>
<property name="csm.database.password" value="${database.password}"/>
<property name="jboss.server.host.port" value="${jboss.server.host}:${jboss.server.port}" />
<if>
<equals arg1="" arg2="${jboss.server.port}" />
<then>
<var name="jboss.server.host.port" unset="true"/>
<property name="jboss.server.host.port" value="${jboss.server.host}" />
</then>
</if>
<echo message="Setting Global DRIVER and URL Property" />
<if>
<equals arg1="mysql" arg2="${database.type}" />
<then>
<property name ="final.database.driver" value="${mysql.driver.string}"/>
<property name="final.database.url" value="jdbc:mysql://${database.host}:${database.port}/${database.name}" />
<property name="final.csm.database.url" value="jdbc:mysql://${csm.database.host}:${csm.database.port}/${csm.database.name}" />
</then>
<elseif>
<equals arg1="oracle" arg2="${database.type}" />
<then>
<property name ="final.database.driver" value="${oracle.driver.string}"/>
<property name="final.database.url" value="jdbc:oracle:thin:@${database.host}:${database.port}:${database.name}" />
<property name="final.csm.database.url" value="jdbc:oracle:thin:@${csm.database.host}:${csm.database.port}:${csm.database.name}" />
</then>
</elseif>
</if>
<!--import file="dbunitbuild.xml"/>
<target name="dbunit_testcases">
<antcall target="RundbUnit" />
</target -->
<!-- Check for required properties -->
<target name="assert" description="Check for required properties">
<if>
<equals arg1="" arg2="${jboss.home.dir}" />
<then>
<fail message="The property 'jboss.home.dir' can not be empty" />
</then>
<else>
<available file="${jboss.bin.run.jar}" property="isJbossValid"/>
<if>
<not>
<equals arg1="true" arg2="${isJbossValid}" />
</not>
<then>
<fail message="'${jboss.home.dir}' is not valid jboss home. Please set valid path for jboss server." />
</then>
</if>
</else>
</if>
<if>
<equals arg1="" arg2="${jboss.server.name}" />
<then>
<fail message="The property 'jboss.server.name' can not be empty" />
</then>
</if>
<if>
<or>
<equals arg1="mysql" arg2="${database.type}" />
<equals arg1="oracle" arg2="${database.type}" />
</or>
<then />
<else>
<fail message="The value of property 'database.type' must be mysql ,oracle" />
</else>
</if>
<!-- Validation for ORACLE_HOME ,tns name and sqlldr if database is oracle-->
<if>
<equals arg1="oracle" arg2="${database.type}" />
<then>
<available file="${oracle_home}" type="dir" property="IsOracleHomeBlank" />
<if>
<not>
<equals arg1="true" arg2="${IsOracleHomeBlank}" />
</not>
<then>
<fail message="ORACLE_HOME is not set on your server. For windows set oracle_home as environment variable or in linux set in .bash_profile file." />
</then>
</if>
<if>
<equals arg1="" arg2="${oracle.tns.name}" />
<then>
<fail message="The property 'oracle.tns.name' can not be empty" />
</then>
</if>
<trycatch>
<try>
<exec executable="tnsping" failonerror="true" >
<arg value="${oracle.tns.name}"/>
</exec>
</try>
<catch>
<fail message="'${oracle.tns.name}' is not a valid tns name. Please set valid tns name for property 'oracle.tns.name'." />
</catch>
</trycatch>
<trycatch>
<try>
<exec executable="sqlldr" failonerror="true"/>
</try>
<catch>
<fail message="'sqlldr' file not found in path. Please make sure this file must be in path." />
</catch>
</trycatch>
</then>
</if>
<if>
<equals arg1="" arg2="${database.host}" />
<then>
<fail message="The property 'database.host' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${database.port}" />
<then>
<fail message="The property 'database.port' can not be empty. Default port for MySQL:3306 ,for Oracle: 1521" />
</then>
</if>
<if>
<equals arg1="" arg2="${database.name}" />
<then>
<fail message="The property 'database.name' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${database.username}" />
<then>
<fail message="The property 'database.username' can not be empty" />
</then>
</if>
<!-- Mandar 17May06 check for first user -->
<if>
<equals arg1="" arg2="${first.admin.department}" />
<then>
<fail message="The property 'first.admin.department' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${first.admin.institution}" />
<then>
<fail message="The property 'first.admin.institution' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${first.admin.cancerresearchgroup}" />
<then>
<fail message="The property 'first.admin.cancerresearchgroup' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${first.admin.emailAddress}" />
<then>
<fail message="The property 'first.admin.emailAddress' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${first.admin.password}" />
<then>
<fail message="The property 'first.admin.password' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${email.administrative.emailAddress}" />
<then>
<echo>email.adminstartive.emailaddress can be left blank.</echo>
</then>
</if>
<if>
<equals arg1="" arg2="${email.sendEmailFrom.emailAddress}" />
<then>
<echo>email.sendEmailFrom.emailAddress can be left blank.</echo>
</then>
</if>
<if>
<equals arg1="" arg2="${email.mailServer}" />
<then>
<echo>email.mailServer can be left blank.</echo>
</then>
</if>
<if>
<equals arg1="" arg2="${email.sendEmailFrom.emailPassword}" />
<then>
<echo>email.sendEmailFrom.emailPassword can be left blank.</echo>
</then>
<else>
<if>
<equals arg1="" arg2="${email.mailServer.port}" />
<then>
<echo>email.mailServer.port cannot be left blank.</echo>
</then>
</if>
<if>
<equals arg1="" arg2="${email.smtp.auth.enabled}" />
<then>
<echo>email.smtp.auth.enabled cannot be left blank.</echo>
</then>
</if>
<if>
<equals arg1="" arg2="${email.smtp.starttls.enabled}" />
<then>
<echo>email.smtp.starttls.enabled cannot be left blank.</echo>
</then>
</if>
</else>
</if>
<!-- Check whether JAVA_HOME environment variable set or not -->
<if>
<contains string="${env.JAVA_HOME}" substring="env.JAVA_HOME"/>
<then>
<fail message="JAVA_HOME is not set. Please make sure to set JAVA_HOME environment variable to the directory of your local JDK." />
</then>
</if>
<if>
<equals arg1="true" arg2="${cider.integration.enabled}" casesensitive="false" />
<then>
<if>
<equals arg1="" arg2="${cider.outbound.queue}" />
<then>
<fail message="The property 'cider.outbound.queue' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${cider.wmq.channel}" />
<then>
<fail message="The property 'cider.wmq.channel' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${cider.wmq.mgr.name}" />
<then>
<fail message="The property 'cider.wmq.mgr.name' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${cider.wmq.port}" />
<then>
<fail message="The property 'cider.wmq.port' can not be empty" />
</then>
</if>
<if>
<equals arg1="" arg2="${cider.wmq.server.name}" />
<then>
<fail message="The property 'cider.wmq.server.name' can not be empty" />
</then>
</if>
</then>
</if>
<if>
<equals arg1="" arg2="${load.balancer.url}" />
<then>
<fail message="The property 'load.balancer.url' can not be empty" />
</then>
</if>
</target>
<!--Target for validation of connection parameters-->
<target name="validate_database_connection" description="Target for validation of connection parameters">
<!-- validation for database connection -->
<trycatch>
<try>
<if>
<equals arg1="mysql" arg2="${database.type}" />
<then>
<sql driver="${mysql.driver.string}" url="jdbc:mysql://${database.host}:${database.port}/${database.name}" userid="${database.username}" password="${database.password}">
<transaction>select 1;</transaction>
<transaction>commit;</transaction>
<classpath>
<fileset dir="${lib.dir}">
<include name="*.jar" />
</fileset>
</classpath>
</sql>
</then>
<elseif >
<equals arg1="oracle" arg2="${database.type}" />
<then>
<sql driver="${oracle.driver.string}" url="jdbc:oracle:thin:@${database.host}:${database.port}:${database.name}" userid="${database.username}" password="${database.password}" rdbms="oracle">
<transaction>select sysdate from dual;</transaction>
<transaction>commit;</transaction>
<classpath>
<fileset dir="${lib.dir}">
<include name="*.jar" />
</fileset>
</classpath>
</sql>
</then>
</elseif>
</if>
</try>
<catch>
<fail message="Connection fails.Please check the database configuration parameters like database.host,database.port,database.name etc. " />
</catch>
</trycatch>
</target>
<target name="configure_contactus" description="configure email address for contactus property">
<replace dir="${temp.dir}/catissuecore-properties" propertyfile="caTissueInstall.properties">
<include name ="ContactUs.txt"/>
<replacefilter token="@@SUPPORTEMAIL@@" value="${email.administrative.emailAddress}"/>
</replace>
</target>
<!--Extrct WAR and copy Configuration files to temp directory-->
<target name="init" description="Extrct WAR and copy Configuration files to temp directory">
<echo message="Initializing installation..." />
<unwar src="${base.dir}/catissuecore.war" dest="${temp.dir}/catissuecore" />
<unwar src="${base.dir}/caTissuePrintWebService.war" dest="${temp.dir}/caTissuePrintWebService" />
<unjar src="${temp.dir}/catissuecore/WEB-INF/lib/DynamicExtensions.jar" dest="${temp.dir}/dynamicExtensionsjar" />
<unzip src="${base.dir}/dynamicextensions.zip" dest="${temp.dir}/dynamicextensions" overwrite="true" />
<copy todir="${temp.dir}/catissuecore-properties" overwrite="true">
<fileset dir="${base.dir}/catissuecore-properties" />
</copy>
<echo message="Copying email-templates to WEB-INF/classes" />
<copy todir="${temp.dir}/catissuecore/WEB-INF/classes/email-templates">
<fileset dir="${temp.dir}/catissuecore-properties/email-templates"/>
</copy>
<delete dir="${temp.dir}/catissuecore-properties/email-templates"/>
<copy todir="${temp.dir}/catissuecore-properties/ng-email-templates" overwrite="true">
<fileset dir="${base.dir}/WEB-INF/resources/ng-email-templates"/>
</copy>
<copy todir="${temp.dir}/catissuecore/WEB-INF/lib" overwrite="true">
<fileset dir="${base.dir}/custom_impl_lib" />
</copy>
<copy todir="${temp.dir}/catissuecore/WEB-INF/classes" overwrite="true">
<fileset dir="${base.dir}/appResources">
<include name="**.*"/>
</fileset>
</copy>
<antcall target="configure_log4j" />
<antcall target="configure_appResources" />
<!-- <unwar src="${base.dir}/catissuecorecsm.war" dest="${temp.dir}/tempcsm"/> -->
<antcall target="configure_contactus" />
<copy file="catissuecore-ds.xml" todir="${temp.dir}" overwrite="true" />
<copy file="${temp.dir}/catissuecore/WEB-INF/classes/DAOConfig.xml" todir="${temp.dir}" />
<!--Kapil V 1.0.1 Changes-->
<copy file="login-config.xml" todir="${temp.dir}" overwrite="true" />
<copy file="properties-service.xml" todir="${temp.dir}" overwrite="true" />
<if>
<not>
<equals arg1="" arg2="${theam.css.path}" />
</not>
<then>
<copy file="${theam.css.path}" tofile="${temp.dir}/catissuecore/css/login-theam.css" overwrite="true" />
</then>
</if>
<if>
<not>
<equals arg1="" arg2="${institute.logo.path}" />
</not>
<then>
<copy file="${institute.logo.path}" todir="${temp.dir}/catissuecore/images" overwrite="true" />
</then>
</if>
</target>
<target name="configure_appResources" description="Configure ApplicationResources.properties">
<replace dir="${temp.dir}/catissuecore/WEB-INF/classes" propertyfile="caTissueInstall.properties">
<include name ="ApplicationResources.properties"/>
<replacefilter token="@@institute.logo.path@@" value="${institute.logo.path}"/>
</replace>
</target>
<target name="configure_log4j" description="Configure log4j.properties">
<replace dir="${temp.dir}/catissuecore-properties" propertyfile="caTissueInstall.properties">
<include name ="log4j.properties"/>
<replacefilter token="@@jbosshome@@" value="${jboss.server.url}"/>
</replace>
</target>
<!--Modify Configuration such as Session Timeout, Admin details and JBoss server port-->
<target name="configure_war" description="Modify Configuration such as Session Timeout, Admin details and JBoss server port">
<echo message="Modifying caTissueCore Configuration File..." />
<replace file="${temp.dir}/catissuecore/WEB-INF/web.xml">
<replacefilter token="<session-timeout>30</session-timeout>" value="<session-timeout>${session.timeout}</session-timeout>" />
</replace>
<!--<replace file="${temp.dir}/catissuecore/WEB-INF/classes/remoteService.xml">
<replacefilter token="@@server.port@@" value="${jboss.server.port}"/>
</replace>-->
</target>
<!--Modify Adopter's Institution images, URL of Institution website and Contact Us, Privacy Notice, Disclaimer, Accessibility Text Files-->
<target name="adopter_configuration" description="Modify Adopter's Institution images, URL of Institution website and Contact Us, Privacy Notice, Disclaimer, Accessibility Text Files">
<echo message="Updating Site Images" />
<copy todir="${temp.dir}/catissuecore/images" overwrite="true">
<fileset dir="${base.dir}/images" />
</copy>
</target>
<!--Modify Configuration For MySQL-->
<target name="mysql_config" description="Modify Configuration For MySQL">
<echo message="Modifying caTissue Suite MySQL specific Configuration File..." />
<replace dir="${temp.dir}/catissuecore-properties" propertyfile="caTissueInstall.properties">
<include name="upt.hibernate.cfg.xml" />
<include name="catissuecore.hibernate.cfg.xml" />
<replacefilter token="@@dialect@@" value="${mysql.dialect.string}" />
</replace>
<!-- added for csm orm1.cfg.xml file-->
<replace dir="${temp.dir}/catissuecore/WEB-INF/classes" propertyfile="caTissueInstall.properties">
<include name="orm1.cfg.xml" />
<replacefilter token="@@dialect@@" value="${mysql.dialect.h3.string}" />
</replace>
<replace dir="${temp.dir}" propertyfile="caTissueInstall.properties">
<include name="catissuecore-ds.xml" />
<include name="login-config.xml" />
<replacefilter token="@@databaseurl@@" value="jdbc:mysql://${database.host}:${database.port}/${database.name}" />
<replacefilter token="@@username@@" value="${database.username}" />
<replacefilter token="@@pasword@@" value="${database.password}" />
<replacefilter token="@@databasedriver@@" value="${mysql.driver.string}" />
</replace>
<replace file="${temp.dir}/catissuecore/WEB-INF/classes/hibernate.cfg.xml">
<replacefilter token="${mysql.dialect.string}" value="${mysql.dialect.string}" />
</replace>
<replace file="${temp.dir}/catissuecore/WEB-INF/classes/ApplicationDAOProperties.xml">
<replacefilter token="${oracle.dao.prop.filename}" value="${mysql.dao.prop.filename}" />
</replace>
<replace file="${temp.dir}/catissuecore/WEB-INF/classes/ApplicationDAOProperties.xml">
<replacefilter token="${oracle.dao.prop.filename}" value="${mysql.dao.prop.filename}" />
</replace>
<replace file="${temp.dir}/catissuecore/WEB-INF/classes/ApplicationDAOProperties.xml">
<replacefilter token="${oracle.dao.datasource.prop.filename}" value="${mysql.dao.datasource.prop.filename}" />
</replace>
</target>
<!--Modify Configuration For Oracle-->
<target name="oracle_config" description="Modify Configuration For Oracle">
<echo message="Modifying caTissue Suite Oracle specific Configuration File..." />
<replace dir="${temp.dir}/catissuecore-properties" propertyfile="caTissueInstall.properties">
<include name="upt.hibernate.cfg.xml" />
<include name="catissuecore.hibernate.cfg.xml" />
<replacefilter token="@@dialect@@" value="${oracle.dialect.string}" />
</replace>
<!-- added for csm orm1.cfg.xml file-->
<replace dir="${temp.dir}/catissuecore/WEB-INF/classes" propertyfile="caTissueInstall.properties">
<include name="orm1.cfg.xml" />
<replacefilter token="@@dialect@@" value="${oracle.dialect.h3.string}" />
</replace>
<!-- Configuring Data Source File-->
<replace dir="${temp.dir}" propertyfile="caTissueInstall.properties">
<include name="catissuecore-ds.xml" />
<include name="login-config.xml" />
<replacefilter token="@@databaseurl@@" value="jdbc:oracle:thin:@${database.host}:${database.port}:${database.name}" />
<replacefilter token="@@username@@" value="${database.username}" />
<replacefilter token="@@pasword@@" value="${database.password}" />
<replacefilter token="@@databasedriver@@" value="${oracle.driver.string}" />
</replace>
<replace file="${temp.dir}/catissuecore/WEB-INF/classes/hibernate.cfg.xml">
<replacefilter token="${mysql.dialect.string}" value="${oracle.dialect.string}" />
</replace>
<replace file="${temp.dir}/catissuecore/WEB-INF/classes/ApplicationDAOProperties.xml">
<replacefilter token="${mysql.dao.prop.filename}" value="${oracle.dao.prop.filename}" />
</replace>
<replace file="${temp.dir}/catissuecore/WEB-INF/classes/ApplicationDAOProperties.xml">
<replacefilter token="${mysql.dao.prop.filename}" value="${oracle.dao.prop.filename}" />
</replace>
<replace file="${temp.dir}/catissuecore/WEB-INF/classes/ApplicationDAOProperties.xml">
<replacefilter token="${mysql.dao.prop.filename}" value="${oracle.dao.prop.filename}" />
</replace>
</target>
<!--Server clean-up-->
<target name="clean_server" description="deletes the WAR file and cache from server, clean-up the server ">
<delete file="${jboss.server.url}/deploy/catissuecore.war" />
<delete file="${jboss.server.url}/deploy/openspecimen.war" />
<delete file="${jboss.server.url}/deploy/cas.war" quiet="true"/>
<delete file="${jboss.server.url}/deploy/dynamicExtensions.war" />
<delete file="${jboss.server.url}/deploy/caTissuePrintWebService.war" />
<delete file="${jboss.server.url}/deploy/pathologySCG.war" />
<delete file="${jboss.server.url}/deploy/pathologySpecimen.war" />
<delete file="${jboss.server.url}/deploy/CA.war" />
<delete file="${jboss.server.url}/deploy/deintegration.war" />
<mkdir dir="${jboss.server.url}/work"/>
<mkdir dir="${jboss.server.url}/tmp"/>
<delete includeemptydirs="true">
<fileset dir="${jboss.server.url}/work">
<include name="**/*" />
</fileset>
</delete>
<delete includeemptydirs="true">
<fileset dir="${jboss.server.url}/tmp">
<include name="**/*" />
</fileset>
</delete>
</target>
<!--Buid New WAR File-->
<target name="build_war" description="Buid New WAR File">
<echo message="Creating New Web Application Archieve File..." />
<delete file="${temp.dir}/catissuecore.war" />
<!-- <delete file="${temp.dir}/caTissuePrintWebService.war" /> -->
<delete file="${temp.dir}/dynamicExtensions.jar" />
<!--
<jar destfile="${temp.dir}/dynamicExtensions.jar" basedir="${temp.dir}/dynamicExtensionsjar" />
<copy file="${temp.dir}/dynamicExtensions.jar" todir="${temp.dir}/catissuecore/WEB-INF/lib" overwrite="true" />
<copy file="${temp.dir}/dynamicExtensions.jar" todir="${temp.dir}/catissuecore/Applet" overwrite="true" />
<copy file="${temp.dir}/dynamicExtensions.jar" todir="${temp.dir}/catissuecore/WEB-INF/Applet" overwrite="true" />
-->
<antcall target="copydeletedjars">
<param name="delPath" value="${temp.dir}/catissuecore/WEB-INF/lib"/>
</antcall>
<war destfile="${temp.dir}/catissuecore.war"
webxml="${temp.dir}/catissuecore/WEB-INF/web.xml" manifest="${base.dir}/MANIFEST.MF">
<fileset dir="${temp.dir}/catissuecore">
<exclude name="**/*build*" />
<exclude name="**/*WEB-INF*" />
<exclude name="**/*servlet.jar*" />
<exclude name="**/*jta.jar*" />
<exclude name="**/WEB-INF/lib/log4j-1.2.9.jar*" />
<exclude name="**/*hibernate2.jar*" />
<exclude name="**/.*" />
<exclude name="**/*.sql" />
<exclude name="**/CVS*" />
<exclude name="**/jta.jar" />
<exclude name="**/pages/subMenu/**" />
<!--excluded for jboss-5.1.0.GA upgrade-->
<exclude name="**/WEB-INF/lib/xalan.jar" />
<exclude name="**/WEB-INF/lib/xbean.jar" />
<exclude name="**/WEB-INF/lib/xercesImpl-1.0.jar" />
<exclude name="**/WEB-INF/lib/xercesImpl.jar" />
<exclude name="**/WEB-INF/lib/xml-apis.jar" />
<exclude name="**/WEB-INF/lib/xmlrpc-2.0.jar" />
<exclude name="**/WEB-INF/lib/scrubber-runtime.jar" />
<exclude name="**/WEB-INF/lib/jax-qname.jar" />
<exclude name="**/WEB-INF/lib/dom4j-1.6.jar" />
<exclude name="**/WEB-INF/lib/jce-jdk13-125.jar" />
<exclude name="**/WEB-INF/lib/jaas.jar" />
<exclude name="**/WEB-INF/lib/jsr173_api.jar" />
<exclude name="**/WEB-INF/lib/namespace.jar" />
<exclude name="**/WEB-INF/lib/${mysql.lib}" />
<exclude name="**/WEB-INF/lib/${oracle.lib}" />
<exclude name="**/WEB-INF/lib/serializer.jar" />
<exclude name="**/WEB-INF/lib/j2ee-1.0.jar" />
</fileset>
</war>
<!-- <war destfile="${temp.dir}/caTissuePrintWebService.war" webxml="${temp.dir}/caTissuePrintWebService/WEB-INF/web.xml">
<fileset dir="${temp.dir}/caTissuePrintWebService">
<include name="**/**/**.*" />
</fileset>
</war> -->
</target>
<target name="copydeletedjars" description="this will delete the unneccessary jar files">
<delete >
<fileset dir="${delPath}">
<include name="backport-util-concurrent-3.0.jar" />
<include name="c3p0-0.8.4.5.jar" />
<include name="c3p0-0.8.5.2.jar" />
<include name="castor-1.0.2.jar" />
<include name="cglib-2.1.jar" />
<include name="commons-collections-2.1.1.jar" />
<include name="commons-collections-3.1.jar" />
<include name="commons-discovery-0.2.jar" />
<include name="commons-fileupload.jar" />
<include name="commons-lang-2.1.jar" />
<include name="commons-logging-1.0.4.jar" />
<!--<include name="dom4*.jar" />-->
<include name="ehcache-1.2.3.jar" />
<include name="freemarker.jar" />
<include name="jakarta-oro.jar" />
<include name="uml-1.3.jar" />
<include name="wsdl4j-1.5.1.jar" />
<include name="xalan-2.4.0.jar" />
<include name="p6spy.jar" />
<include name="sdkClient.jar" />
<include name="uuid-key-generator.jar" />
<include name="wsdl4j.jar" />
<include name="j2ee.jar" />
<include name="caGrid-1.0-caDSR-client.jar" />
<include name="caGrid-1.0-caDSR-common.jar" />
<include name="caGrid-1.0-caDSR-stubs.jar" />
<include name="caGrid-1.0-core.jar" />
<include name="caGrid-1.0-data-common.jar" />
<include name="caGrid-1.0-data-stubs.jar" />
<include name="caGrid-1.0-data-utils.jar" />
<include name="caGrid-1.0-fqp-client.jar" />
<include name="caGrid-1.0-fqp-common.jar" />
<include name="caGrid-1.0-fqp-stubs.jar" />
<include name="caGrid-1.0-metadata-common.jar" />
<include name="caGrid-1.0-metadata-security.jar" />
<include name="caGrid-1.0-sdkQuery.jar" />
<include name="caGrid-1.0-ServiceSecurityProvider-client.jar" />
<include name="caGrid-1.0-ServiceSecurityProvider-common.jar" />
<include name="jboss-common-jdbc-wrapper.jar"/>
<include name="mysql-connector-java-3.1.13-bin.jar"/>
<include name="oracleDriver.jar"/>
<include name="boot.jar" />
<!--<include name="c3p0-0.9.0.jar" />-->
<include name="catissuecore-client.jar" />
<include name="experiment-client.jar" />
<!-- include name="jboss-client.jar" /
<include name="junit-4.1.jar" />-->
<include name="mockobjects-core-0.09.jar" />
<include name="mysql-connector-java-5.0.8-bin.jar" />
<include name="ojdbc14.jar" />
<include name="openide-util.jar" />
<include name="acrobat-core.jar" />
<!-- removed to work printwebservice -->
<include name="jaxrpc.jar" />
<include name="saaj.jar" />
<include name="jboss-jaxws.jar" />
</fileset>
</delete>
</target>
<!--Copy WAR and Configuration Files to JBOSS Directory-->
<target name="Configure_Printservice" description="Copy WAR and Configuration Files to JBOSS Directory">
<if>
<and>
<equals arg1="" arg2="${jboss.server.host}" />
<equals arg1="" arg2="${jboss.container.secure}"/>
<equals arg1="" arg2="${jboss.server.port}"/>
</and>
<then>
<replace file="${temp.dir}/catissuecore-properties/PrintServiceImplementor.properties">
<replacefilter token="http://localhost:8080/" value="https://${jboss.server.host}:${jboss.server.port}/" />
</replace>
</then>
</if>
</target>
<target name="copy_files" description="copy Configuration Files to JBOSS Directory">
<echo message="Copying caTissue Suite Application Components..." />
<!--Copying caTissueCdmsIntegration.properties file-->
<copy todir="${temp.dir}/catissuecore-properties" overwrite="true">
<fileset dir="${basedir}">
<include name="caTissueCdmsIntegration.properties" />
</fileset>
<fileset file="${dashboard.items.file}" />
</copy>
<property name="help.desk.number" value="${contact.number}" />
<if>
<equals arg1="" arg2="${contact.number}" />
<then>
<var name="help.desk.number" unset="true"/>
<property name="help.desk.number" value="" />
</then>
</if>
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml">
<replacefilter token="@@Forgot-Password-Enabled@@" value="${forgot.password.enabled}" />
<replacefilter token="@@Load-Balancer-URL@@" value="${load.balancer.url}" />
<replacefilter token="@@ADMIN-EMAILADDRESS@@" value="${email.administrative.emailAddress}" />
<replacefilter token="@@SENDEMAILFROM-EMAILADDRESS@@" value="${email.sendEmailFrom.emailAddress}" />
<replacefilter token="@@MAILSERVER-EMAILADDRESS@@" value="${email.mailServer}" />
<replacefilter token="@@SENDEMAILFROM-EMAILPASSWORD@@" value="${email.sendEmailFrom.emailPassword}" />
<replacefilter token="@@MAILSERVER-PORT@@" value="${email.mailServer.port}" />
<replacefilter token="@@MAILSERVER-AUTHENTICATON@@" value="${email.smtp.auth.enabled}" />
<replacefilter token="@@MAILSERVER-TLS-ENABLED@@" value="${email.smtp.starttls.enabled}" />
<replacefilter token="@@IDP-ENABLED@@" value="${idp.enabled}" />
<replacefilter token="@@SESSION-TIME-OUT@@" value="${session.timeout}" />
<replacefilter token="@@APP-ADDITIONAL-INFO@@" value="${app.additional.info}" />
<replacefilter token="@@integrationEnabled@@" value="${clinportal.integrationEnabled}" />
<replacefilter token="@@CdmsURL@@" value="${clinportal.url}" />
<replacefilter token="@@CdmsKeyStorePath@@" value="" />
<replacefilter token="@@appserver.home.dir@@" value="${jboss.home.dir}" />
<replacefilter token="@@enable.morphological.hierarchy@@" value="${enable.morphology}" />
<replacefilter token="@@use.email.commonpackage.config@@" value="${use.email.commonpackage.config}" />
<replacefilter token="@@email.sendEmailTo.emailAddress@@" value="${email.sendEmailTo.emailAddress}" />
<replacefilter token="@@email.admin.support.emailAddress@@" value="${email.admin.support.emailAddress}" />
<replacefilter token="@@email.sendEmailFrom.name@@" value="${email.sendEmailFrom.name}" />
<replacefilter token="@@email.exception.subject@@" value="${email.exception.subject}" />
<!-- added by Amol .For eMPI integration -->
<replacefilter token="@@empiDBURL@@" value="jdbc:db2://${empi.database.host}:${empi.database.port}/${empi.database.name}" />
<replacefilter token="@@empiDBUserName@@" value="${empi.database.username}" />
<replacefilter token="@@empiDBUserPassword@@" value="${empi.database.password}" />
<replacefilter token="@@empiDBDriverName@@" value="${db2.driver.string}" />
<replacefilter token="@@empiDBSchema@@" value="${empi.database.schema}" />
<replacefilter token="@@WMQServerName@@" value="${wmq.server.name}" />
<replacefilter token="@@WMQMGRName@@" value="${wmq.mgr.name}" />
<replacefilter token="@@WMQChannel@@" value="${wmq.channel}" />
<replacefilter token="@@WMQPort@@" value="${wmq.port}" />
<replacefilter token="@@HL7ListenerAdminUser@@" value="${hl7.listener.admin.user}" />
<!-- END -->
<replacefilter token="@@anticipatedSCGEnabled@@" value="${create.anticipated.scg}" />
<replacefilter token="@@CiderWMQEnabled@@" value="${cider.integration.enabled}" />
<replacefilter token="@@CiderWMQServerName@@" value="${cider.wmq.server.name}" />
<replacefilter token="@@CiderWMQMGRName@@" value="${cider.wmq.mgr.name}" />
<replacefilter token="@@CiderWMQChannel@@" value="${cider.wmq.channel}" />
<replacefilter token="@@CiderWMQPort@@" value="${cider.wmq.port}" />
<!--<replacefilter token="@@CiderInBoundQueue@@" value="${cider.inbound.queue}" />-->
<replacefilter token="@@CiderOutBoundQueue@@" value="${cider.outbound.queue}" />
<replacefilter token="@@InBoundQueue@@" value="${empi.inBoundQueue}" />
<replacefilter token="@@OutBoundQueue@@" value="${empi.outBoundQueue}" />
<replacefilter token="@@MergeMessageQueue@@" value="${empi.mergeMessageQueue}" />
<replacefilter token="@@ADMIN-EMAILADDRESS@@" value="${email.administrative.emailAddress}" />
<replacefilter token="@@SENDEMAILFROM-EMAILADDRESS@@" value="${email.sendEmailFrom.emailAddress}" />
<replacefilter token="@@MAILSERVER-EMAILADDRESS@@" value="${email.mailServer}" />
<replacefilter token="@@IDP-ENABLED@@" value="${idp.enabled}" />
<replacefilter token="@@SESSION-TIME-OUT@@" value="${session.timeout}" />
<replacefilter token="@@APP-ADDITIONAL-INFO@@" value="${app.additional.info}" />
<replacefilter token="@@integrationEnabled@@" value="${clinportal.integrationEnabled}" />
<replacefilter token="@@CdmsURL@@" value="${clinportal.url}" />
<replacefilter token="@@CdmsKeyStorePath@@" value="" />
<replacefilter token="@@use.email.commonpackage.config@@" value="${use.email.commonpackage.config}" />
<replacefilter token="@@email.sendEmailTo.emailAddress@@" value="${email.sendEmailTo.emailAddress}" />
<replacefilter token="@@email.admin.support.emailAddress@@" value="${email.admin.support.emailAddress}" />
<replacefilter token="@@email.sendEmailFrom.name@@" value="${email.sendEmailFrom.name}" />
<replacefilter token="@@email.exception.subject@@" value="${email.exception.subject}" />
<replacefilter token="@@CiderWMQEnabled@@" value="${cider.integration.enabled}" />
<replacefilter token="@@CiderWMQServerName@@" value="${cider.wmq.server.name}" />
<replacefilter token="@@CiderWMQMGRName@@" value="${cider.wmq.mgr.name}" />
<replacefilter token="@@CiderWMQChannel@@" value="${cider.wmq.channel}" />
<replacefilter token="@@CiderWMQPort@@" value="${cider.wmq.port}" />
<!--<replacefilter token="@@CiderInBoundQueue@@" value="${cider.inbound.queue}" />-->
<replacefilter token="@@CiderOutBoundQueue@@" value="${cider.outbound.queue}" />
<!-- added for spr report dir -->
<replacefilter token="@@spr.dir.location@@" value="${spr.dir.location}" />
<replacefilter token="@@participant.consent.dir.location@@" value="${participant.consent.dir.location}" />
<replacefilter token="@@spr.dwd.terms.condiition.url@@" value="${spr.dwd.terms.condiition.url}" />
<replacefilter token="@@theam.css.path@@" value="${theam.css.path}" />
<replacefilter token="@@institute.logo.hyperlink@@" value="${institute.logo.hyperlink}" />
<replacefilter token="@@data.at.glance.visible@@" value="${data.at.glance.visible}" />
<replacefilter token="@@user.manual@@" value="${user.manual}" />
<replacefilter token="@@contact.number@@" value="${help.desk.number}" />
<replacefilter token="@@whats.new@@" value="${whats.new}" />
<!-- Scheduler config -->
<replacefilter token="@@threadPool@@" value="${scheduler.threadPool.size}" />
<replacefilter token="@@time.hrs@@" value="${scheduler.execution.time.hrs}" />
<replacefilter token="@@time.min@@" value="${scheduler.execution.time.min}" />
<replacefilter token="@@mail.alias@@" value="${host.mail.alias}" />
<replacefilter token="@@timeInterval@@" value="${scheduler.cleanUp.timeInterval.days}" />
<!-- End of scheduler config -->
<replacefilter token="@@database.type@@" value="${database.type}" />
<replacefilter token="@@database.host@@" value="${database.host}" />
<replacefilter token="@@database.port@@" value="${database.port}" />
<replacefilter token="@@database.name@@" value="${database.name}" />
<replacefilter token="@@database.userName@@" value="${database.username}" />
<replacefilter token="@@database.password@@" value="${database.password}" />
<replacefilter token="@@dashboard.items.file@@" value="${dashboard.items.file}" />
<!-- Nightly Cron Job Config -->
<replacefilter token="@@nightly.cron.job.execution.time.hrs@@" value="${nightly.cron.job.execution.time.hrs}" />
<replacefilter token="@@nightly.cron.job.execution.time.min@@" value="${nightly.cron.job.execution.time.min}" />
<!-- Nightly Cron Job Config End -->
<replacefilter token="@@usermanual@@" value="${user.manual}" />
</replace>
<replace file="${temp.dir}/catissuecore-properties/help_links.xml" token="@@usermanual@@" value="${user.manual}" />
<!-- Add values to properties if EMPI feature is enabled-->
<if>
<equals arg1="true" arg2="${empi.enabled}" />
<then>
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@InBoundQueue@@" value="${empi.inBoundQueue}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@OutBoundQueue@@" value="${empi.outBoundQueue}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@MergeMessageQueue@@" value="${empi.mergeMessageQueue}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@empiEnabled@@" value="${empi.enabled}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@empiDBURL@@" value="jdbc:db2://${empi.database.host}:${empi.database.port}/${empi.database.name}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@empiDBUserName@@" value="${empi.database.username}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@empiDBUserPassword@@" value="${empi.database.password}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@empiDBDriverName@@" value="${db2.driver.string}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@empiDBSchema@@" value="${empi.database.schema}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@WMQServerName@@" value="${wmq.server.name}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@WMQMGRName@@" value="${wmq.mgr.name}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@WMQChannel@@" value="${wmq.channel}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@WMQPort@@" value="${wmq.port}" />
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@HL7ListenerAdminUser@@" value="${hl7.listener.admin.user}" />
</then>
<else>
<replace file="${temp.dir}/catissuecore-properties/caTissueCore_Properties.xml" token="@@empiEnabled@@" value="false" />
</else>
</if>
<replace file="${temp.dir}/catissuecore-properties/caTissueCdmsIntegration.properties">
<replacefilter token="@@CdmsURL@@" value="${clinportal.url}" />
<replacefilter token="@@CdmsKeyStorePath@@" value="" />
</replace>
<antcall target="Configure_Printservice"/>
<copy todir="${jboss.server.url}/catissuecore-properties" overwrite="true">
<fileset dir="${temp.dir}/catissuecore-properties">
<include name="**/*" />
</fileset>
</copy>
<copy todir="${jboss.server.url}/deploy" overwrite="true">
<fileset dir="${temp.dir}">
<include name="catissuecore-ds.xml" />
<include name="catissuecorecsm.war" />
<include name="caTissuePrintWebService.war" />
</fileset>
</copy>
<copy todir="${jboss.server.url}/deploy" overwrite="true">
<fileset dir="${temp.dir}"/>
<globmapper from="catissuecore.war" to="openspecimen.war"/>
</copy>
<copy file="performance.properties" todir="${rel.jboss.home}/server/default/conf" overwrite="true"/>
<replace dir="${jboss.server.url}/catissuecore-properties">
<include name="ApplicationSecurityConfig.xml" />
<replacefilter token="@@hibernate-config-file@@" value="${jboss.server.url}/catissuecore-properties/catissuecore.hibernate.cfg.xml" />
</replace>
<if>
<equals arg1="true" arg2="${install.db.driver}" />
<then>
<copy todir="${jboss.server.url}/lib" overwrite="true">
<fileset dir="${lib.dir}">
<include name="${mysql.lib}" />
<include name="${oracle.lib}" />
</fileset>
</copy>
</then>
</if>
<copy todir="${rel.jboss.home}/bin" overwrite="true">
<fileset dir="${temp.dir}">
<include name="DAOConfig.xml" />
</fileset>
</copy>
<delete file="${jboss.server.url}/lib/oracleDriver.jar" casesensitive="false"/>
<!-- added for printwebservice -->
<copy todir="${rel.jboss.home}/server/default/lib" overwrite="true">
<fileset dir="${rel.jboss.home}/client">
<include name="policy.jar" />
<include name="jbossws-client.jar" />
<include name="wsdl4j.jar" />
<include name="jboss-common-client.jar" />
</fileset>
</copy>
<!--Copying mapping.xml and bulkOperation.properties file-->
<copy todir="${basedir}/catissuecore-properties" overwrite="true">
<fileset dir="${basedir}">
<include name="bulkOperation.properties" />
</fileset>
</copy>
</target>
<target name="deploy_ca_model_war" description="deploy the ca_model_war">
<antcall target="CopyCAModelWars"/>
</target>
<path id="liquibaseClasspath">
<fileset dir="${lib.dir}" includes="*.jar" />
</path>
<path id="deLiquibaseClasspath">
<fileset dir="${lib.dir}" includes="*.jar" />
<pathelement path="${temp.dir}/dynamicextensions/db/liquibase"/>
</path>
<taskdef resource="liquibasetasks.properties">
<classpath>
<pathelement location="${lib.dir}/liquibase.jar" />
</classpath>
</taskdef>
<target name="upgrade_db_to_plus_v10">
<echo message="Upgrading DataBase with URL ${final.database.url}" />
<updateDatabase changeLogFile="${base.dir}/SQL/liquibase_xml/DBUpgrade_v10.xml" driver="${final.database.driver}" url="${final.database.url}" username="${database.username}" password="${database.password}" dropFirst="false" classpathref="liquibaseClasspath" />
</target>
<target name="upgrade_db_to_plus_v20">
<echo message="Upgrading DataBase with URL ${final.database.url}" />
<updateDatabase changeLogFile="${base.dir}/SQL/liquibase_xml/DBUpgrade_v20.xml" driver="${final.database.driver}" url="${final.database.url}" username="${database.username}" password="${database.password}" dropFirst="false" classpathref="liquibaseClasspath" />
</target>
<target name="liquibase_upgrade_target">