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ro-base.json
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ro-base.json
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{
"graphs" : [ {
"id" : "http://purl.obolibrary.org/obo/ro/ro-base.json",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/elements/1.1/type",
"val" : "http://purl.obolibrary.org/obo/IAO_8000001"
}, {
"pred" : "http://purl.org/dc/terms/description",
"val" : "The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies."
}, {
"pred" : "http://purl.org/dc/terms/license",
"val" : "https://creativecommons.org/publicdomain/zero/1.0/"
}, {
"pred" : "http://purl.org/dc/terms/title",
"val" : "OBO Relations Ontology"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2023-08-18"
}, {
"pred" : "http://xmlns.com/foaf/0.1/homepage",
"val" : " https://github.com/oborel/obo-relations/"
} ],
"version" : "http://purl.obolibrary.org/obo/ro/releases/2023-08-18/ro-base.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/BFO_0000002",
"lbl" : "continuant",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000003",
"lbl" : "occurrent",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "An entity that has temporal parts and that happens, unfolds or develops through time."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000004",
"lbl" : "independent continuant",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"
},
"comments" : [ "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000006",
"lbl" : "spatial region",
"type" : "CLASS"
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000015",
"lbl" : "process",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"
},
"comments" : [ "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000016",
"lbl" : "disposition",
"type" : "CLASS"
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000017",
"lbl" : "realizable entity",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000019",
"lbl" : "quality",
"type" : "CLASS"
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000020",
"lbl" : "specifically dependent continuant",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])"
},
"comments" : [ "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000023",
"lbl" : "role",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000031",
"lbl" : "generically dependent continuant",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"
},
"comments" : [ "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000034",
"lbl" : "function",
"type" : "CLASS"
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000040",
"lbl" : "material entity",
"type" : "CLASS",
"meta" : {
"definition" : {
"val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000050",
"lbl" : "part of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a core relation that holds between a part and its whole"
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "is part of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my brain is part of my body (continuant parthood, two material entities)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this day is part of this year (occurrent parthood)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "part_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000002"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000003"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000004"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000017"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000019"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000020"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0040042",
"val" : "http://purl.obolibrary.org/obo/BFO_0000031"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://wiki.geneontology.org/Part_of"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000051",
"lbl" : "has part",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a core relation that holds between a whole and its part"
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "has part"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my body has part my brain (continuant parthood, two material entities)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this year has part this day (occurrent parthood)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_part"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000054",
"lbl" : "realized in",
"type" : "PROPERTY",
"meta" : {
"comments" : [ "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "realized in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this disease is realized in this disease course"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this fragility is realized in this shattering"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this investigator role is realized in this investigation"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is realized by"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "realized_in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000600",
"val" : "[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.obolibrary.org/obo/bfo.owl"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000055",
"lbl" : "realizes",
"type" : "PROPERTY",
"meta" : {
"comments" : [ "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "realizes"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this disease course realizes this disease"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this investigation realizes this investigator role"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this shattering realizes this fragility"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000600",
"val" : "to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.obolibrary.org/obo/iao.owl"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000060",
"lbl" : "obsolete preceded by",
"type" : "PROPERTY",
"meta" : {
"comments" : [ "accidentally included in BFO 1.2 proposal\n - should have been BFO_0000062" ],
"deprecated" : true
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000062",
"lbl" : "preceded by",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "preceded by"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is preceded by"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "preceded_by"
}, {
"pred" : "http://purl.org/dc/terms/source",
"val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000063",
"lbl" : "precedes",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "precedes"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000066",
"lbl" : "occurs in",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"
},
"comments" : [ "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" ],
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "occurs in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "occurs_in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "unfolds in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "unfolds_in"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.obolibrary.org/obo/bfo.owl"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://wiki.geneontology.org/Occurs_in"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000067",
"lbl" : "contains process",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"
},
"comments" : [ "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "site of"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.obolibrary.org/obo/bfo.owl"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/BFO_0000141",
"lbl" : "immaterial entity",
"type" : "CLASS"
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000112",
"lbl" : "example of usage",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000115",
"lbl" : "definition",
"type" : "PROPERTY"
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000426",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "An assertion that holds between an OWL Object Property and a string or literal, where the value of the string or literal is a Common Logic sentence of collection of sentences that define the Object Property."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000052",
"lbl" : "characteristic of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence."
},
"comments" : [ "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "inheres in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this fragility is a characteristic of this vase"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this red color is a characteristic of this apple"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "inheres_in"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000053",
"lbl" : "has characteristic",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Inverse of characteristic_of"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "bearer of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this apple is bearer of this red color"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this vase is bearer of this fragility"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "bearer_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is bearer of"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000056",
"lbl" : "participates in",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "participates in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this blood clot participates in this blood coagulation"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this input material (or this output material) participates in this process"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this investigator participates in this investigation"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "participates_in"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000057",
"lbl" : "has participant",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "has participant"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this blood coagulation has participant this blood clot"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this investigation has participant this investigator"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this process has participant this input material (or this output material)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_participant"
}, {
"pred" : "http://purl.org/dc/terms/source",
"val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000058",
"lbl" : "is concretized as",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000059",
"lbl" : "concretizes",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000079",
"lbl" : "function of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence"
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this catalysis function is a function of this enzyme"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "function_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is function of"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000080",
"lbl" : "quality of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this red color is a quality of this apple"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A quality inheres in its bearer at all times for which the quality exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is quality of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "quality_of"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000081",
"lbl" : "role of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this investigator role is a role of this person"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is role of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "role_of"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000085",
"lbl" : "has function",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_function"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000086",
"lbl" : "has quality",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this apple has quality this red color"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_quality"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000087",
"lbl" : "has role",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this person has role this investigator role (more colloquially: this person has this role of investigator)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_role"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000091",
"lbl" : "has disposition",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence"
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000092",
"lbl" : "disposition of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "inverse of has disposition"
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000300",
"lbl" : "obsolete in neural circuit with",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "OBSOLETE A relation that holds between two neurons connected directly via a synapse, or indirectly via a series of synaptically connected neurons."
},
"comments" : [ "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other)." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-7073-9172"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://purl.org/spar/cito/citesAsAuthority",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/22402613"
} ],
"deprecated" : true
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000301",
"lbl" : "obsolete upstream in neural circuit with",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "OBSOLETE A relation that holds between a neuron that is synapsed_to another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_to the next, in which the direction is from the last to the first."
},
"comments" : [ "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other)." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-7073-9172"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://purl.org/spar/cito/citesAsAuthority",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/22402613"
} ],
"deprecated" : true
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000302",
"lbl" : "obsolete downstream in neural circuit with",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "OBSOLETE A relation that holds between a neuron that is synapsed_by another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_by the next, in which the direction is from the last to the first."
},
"comments" : [ "Obsoleted as no longer a useful relationship (all neurons in an organism are in a neural circuit with each other)." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-7073-9172"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://purl.org/spar/cito/citesAsAuthority",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/22402613"
} ],
"deprecated" : true
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001000",
"lbl" : "derives from",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this cell derives from this parent cell (cell division)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this nucleus derives from this parent nucleus (nuclear division)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "derives_from"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations."
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001001",
"lbl" : "derives into",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this parent cell derives into this cell (cell division)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this parent nucleus derives into this nucleus (nuclear division)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "derives_into"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001015",
"lbl" : "location of",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between two independent continuants, the location and the target, in which the target is entirely within the location"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "is location of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my head is the location of my brain"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this cage is the location of this rat"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "location_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001018",
"lbl" : "obsolete contained in",
"type" : "PROPERTY",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "contained in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Containment is location not involving parthood, and arises only where some immaterial continuant is involved."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "contained_in"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/oborel/obo-relations/issues/693"
} ],
"deprecated" : true
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001019",
"lbl" : "obsolete contains",
"type" : "PROPERTY",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "contains"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/oborel/obo-relations/issues/693"
} ],
"deprecated" : true
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001020",
"lbl" : "is allergic trigger for",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relation between a material entity and a condition (a phenotype or disease) of a host, in which the material entity is not part of the host, and is considered harmless to non-allergic hosts, and the condition results in pathological processes that include an abnormally strong immune response against the material entity."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "penicillin (CHEBI:17334) is allergic trigger for penicillin allergy (DOID:0060520)"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001021",
"lbl" : "is autoimmune trigger for",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relation between a material entity and a condition (a phenotype or disease) of a host, in which the material entity is part of the host itself, and the condition results in pathological processes that include an abnormally strong immune response against the material entity."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001022",
"lbl" : "has allergic trigger",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relation between a condition (a phenotype or disease) of a host and a material entity, in which the material entity is not part of the host, and is considered harmless to non-allergic hosts, and the condition results in pathological processes that include an abnormally strong immune response against the material entity."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "penicillin allergy (DOID:0060520) has allergic trigger penicillin (CHEBI:17334)"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001023",
"lbl" : "has autoimmune trigger",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A relation between a condition (a phenotype or disease) of a host and a material entity, in which the material entity is part of the host itself, and the condition results in pathological processes that include an abnormally strong immune response against the material entity."
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001025",
"lbl" : "located in",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "a relation between two independent continuants, the target and the location, in which the target is entirely within the location"
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "located in"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "my brain is located in my head"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this rat is located in this cage"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "located_in"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://purl.org/dc/terms/source",
"val" : "http://www.obofoundry.org/ro/#OBO_REL:located_in"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://wiki.geneontology.org/Located_in"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001900",
"lbl" : "temporal interpretation",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context."
},
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001901",
"lbl" : "axiom holds for all times",
"type" : "INDIVIDUAL",
"meta" : {
"definition" : {
"val" : "## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the "atemporal" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation"
}
}
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0001902",
"lbl" : "relation has no temporal argument",
"type" : "INDIVIDUAL",
"meta" : {