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Makefile.am
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Makefile.am
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AUTOMAKE_OPTIONS = foreign
LIBS=@LIBS@
LIBDIR=@LIBDIR@
EXECNAME=@EXECNAME@
LIBNAME=@LIBNAME@
ACLOCAL_AMFLAGS="-Im4"
AM_CXXFLAGS = -I$(top_srcdir) $(BOOST_CPPFLAGS) -fopenmp
# AM_CXXFLAGS += -DHAVE__BOOL -D__NOPLUGIN__
AM_FFLAGS = $(my_include_paths)
AM_CPPFLAGS=$(myincludes)
my_ld_flags = $(LDFLAGS) -lgsl -lgslcblas $(BOOST_PROGRAM_OPTIONS_LIBS)
my_ld_paths = -L$(top_srcdir)
bin_PROGRAMS = reliefseq
reliefseq_SOURCES = ReliefSeqCLI.cpp Insilico.cpp DistanceMetrics.cpp \
Statistics.cpp Dataset.cpp ArffDataset.cpp \
PlinkDataset.cpp PlinkBinaryDataset.cpp PlinkRawDataset.cpp DgeData.cpp \
BirdseedData.cpp DatasetInstance.cpp AttributeRanker.cpp ChiSquared.cpp \
ReliefF.cpp RReliefF.cpp SNReliefF.cpp ReliefFSeq.cpp ReliefSeqController.cpp \
config.h GSLRandomBase.h GSLRandomFlat.h Insilico.h DistanceMetrics.h \
Statistics.h Dataset.h ArffDataset.h StringUtils.h BestN.h \
PlinkDataset.h PlinkBinaryDataset.h PlinkRawDataset.h DgeData.h \
BirdseedData.h DatasetInstance.h AttributeRanker.h ChiSquared.h \
ReliefF.h RReliefF.h SNReliefF.h ReliefFSeq.h ReliefSeqController.h
# libtool libraries
reliefseq_LDFLAGS = -fopenmp
reliefseq_LDADD = $(my_ld_flags) $(my_ld_paths)