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DESCRIPTION
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DESCRIPTION
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Package: CB2
Type: Package
Title: CRISPR Pooled Screen Analysis using Beta-Binomial Test
Version: 1.3.5
Date: 2022-06-07
Authors@R:
c(person(given = "Hyun-Hwan", family = "Jeong", role = c("aut", "cre"), email = "[email protected]"))
Description: Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis.
Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
LazyData: true
Imports:
Rcpp (>= 0.12.16),
metap,
magrittr,
dplyr,
tibble,
stringr,
ggplot2,
tidyr,
glue,
pheatmap,
tools,
readr,
parallel,
R.utils
LinkingTo: Rcpp, RcppArmadillo
Suggests:
testthat,
knitr,
rmarkdown
RoxygenNote: 7.2.0
Encoding: UTF-8
VignetteBuilder: knitr