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h5bench-hdf5-1.10.7.yml
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name: h5bench (HDF5 1.10.7)
on:
pull_request:
workflow_dispatch:
push:
branches:
- master
jobs:
h5bench:
runs-on: ubuntu-20.04
container:
image: hpcio/hdf5-1.10.7
timeout-minutes: 60
env:
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
steps:
- uses: actions/checkout@v1
with:
submodules: true
- name: Configuration
run: |
git config --global user.email "[email protected]"
git config --global user.name "Github CI"
- name: Build h5bench
run: |
export HDF5_HOME=/opt/hdf5
mkdir build
cd build
cmake .. \
-DH5BENCH_ALL=ON
make -j 2
make install
- name: Test h5bench SYNC write/read
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-read-contig-1d-small.json
- name: Test h5bench SYNC write 1D contiguous (memory) strided (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-strided.json
- name: Test h5bench SYNC write 1D contiguous (memory) contiguous (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig.json
- name: Test h5bench SYNC write 1D contiguous (memory) interleaved (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-interleaved.json
- name: Test h5bench SYNC write 1D interleaved (memory) contiguous (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-interleaved-contig.json
- name: Test h5bench SYNC write 1D interleaved (memory) interleaved (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-interleaved-interleaved.json
- name: Test h5bench SYNC write 2D contiguous (memory) contiguous (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-contig.json
- name: Test h5bench SYNC write 2D contiguous (memory) interleaved (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-interleaved.json
- name: Test h5bench SYNC write 2D interleaved (memory) contiguous (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-interleaved-contig.json
- name: Test h5bench SYNC write 2D interleaved (memory) interleaved (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-interleaved-interleaved.json
- name: Test h5bench SYNC write 3D contiguous (memory) contiguous (file)
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-3d-contig-contig.json
- name: Test h5bench SYNC read 1D contiguous (memory) contiguous (file) full
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig-read-full.json
- name: Test h5bench SYNC read 1D contiguous (memory) contiguous (file) partial
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig-read-partial.json
- name: Test h5bench SYNC read 1D contiguous (memory) contiguous (file) strided
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-1d-contig-contig-read-strided.json
- name: Test h5bench SYNC read 2D contiguous (memory) contiguous (file) full
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-contig-read-full.json
- name: Test h5bench SYNC read 3D contiguous (memory) contiguous (file) full
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure --validate-mode ../samples/sync-write-2d-contig-contig-read-full.json
- name: Test h5bench SYNC write unlimited
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure ../samples/sync-write-unlimited.json
- name: Test h5bench SYNC overwrite
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure ../samples/sync-overwrite.json
- name: Test h5bench SYNC append
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure ../samples/sync-append.json
- name: Test h5bench SYNC exerciser
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure ../samples/sync-exerciser.json
- name: Test h5bench SYNC metadata
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure ../samples/sync-metadata.json
- name: Test h5bench SYNC amrex
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure ../samples/sync-amrex.json
- name: Test h5bench SYNC openpmd
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure ../samples/sync-openpmd.json
- name: Test h5bench SYNC e3sm
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure ../samples/sync-e3sm.json
- name: Test h5bench SYNC macsio
run: |
export LD_LIBRARY_PATH=/opt/hdf5/lib:$LD_LIBRARY_PATH
cd build
./h5bench --debug --abort-on-failure ../samples/sync-macsio.json
- name: Setup tmate session
if: ${{ failure() }}
uses: mxschmitt/action-tmate@v3
- name: Upload artifact
if: always()
uses: actions/upload-artifact@v2
with:
name: test
path: build/h5bench_e3sm-prefix/src/h5bench_e3sm-stamp/*
retention-days: 5