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[Bug]: Test for parallel write failing with HDMF dev #127

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3 tasks done
oruebel opened this issue Oct 1, 2023 · 0 comments · Fixed by #128
Closed
3 tasks done

[Bug]: Test for parallel write failing with HDMF dev #127

oruebel opened this issue Oct 1, 2023 · 0 comments · Fixed by #128
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@oruebel
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oruebel commented Oct 1, 2023

What happened?

The test suite is currently failing when running against the development version of HDMF on the dev branch.

hdmf-dev/hdmf#953 added checks for initialization of ids in DynamicTable, which causes and error for the parallel tests because ids don't appear to be specified.

Steps to Reproduce

pytest

Traceback

======================================================================================== short test summary info =========================================================================================
FAILED tests/unit/test_parallel_write.py::test_simple_tqdm - ValueError: Cannot determine row id's for table. Must provide ids with same length as the columns when all columns are specified via DataChunkIterator objects.
FAILED tests/unit/test_parallel_write.py::test_compound_tqdm - ValueError: Cannot determine row id's for table. Must provide ids with same length as the columns when all columns are specified via DataChunkIterator objects.
============================================================================= 2 failed, 451 passed, 4002 warnings in 16.15s ==============================================================================

Operating System

Windows

Python Executable

Conda

Python Version

3.8

Package Versions

...

Code of Conduct

@oruebel oruebel self-assigned this Oct 1, 2023
mavaylon1 added a commit that referenced this issue Oct 1, 2023
* Fix #127 update paralle write test to set table ids

* Update CHANGELOG

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Co-authored-by: Matthew Avaylon <[email protected]>
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